BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031001
         (820 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containi...   281   2e-73
emb|CBI22251.3| unnamed protein product [Vitis vinifera]              281   2e-73
ref|XP_002530005.1| pentatricopeptide repeat-containing protein,...   279   5e-73
emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]   278   1e-72
ref|XP_003601393.1| Pentatricopeptide repeat-containing protein ...   262   8e-68

>ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein At1g74630-like
            [Vitis vinifera]
          Length = 663

 Score =  281 bits (718), Expect = 2e-73
 Identities = 132/181 (72%), Positives = 155/181 (85%)
 Frame = -3

Query: 818  KSLITWNSMISALANHGNVEEAVGLFHNMVYSGVRPDGVTFLALLAAYTHNGLVDEGCRL 639
            KSLITWNSMISA ANHGN E+A  +F  M+YSG+RPDGVTFLALL AYTH G VD+G  L
Sbjct: 482  KSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDGVTFLALLTAYTHKGWVDDGYGL 541

Query: 638  FQSMQSDYGIEAGIEHYGCMVDMLGRAGLLEEAYELITTMPIPSNDVVWGALLGACRIYG 459
            F+SMQ DYG+EAG+EHYGCMVDMLGRAG LEEAY+LIT+M +P NDVVWGALL ACRIYG
Sbjct: 542  FESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDVVWGALLAACRIYG 601

Query: 458  NIDMGERVVKKLLELKPDEGGYYILLSDMYAAAGRQVEAMKMRETMKIVGAQKNTGISWV 279
            +++MGERV+KKL+ELKPDEGGYYILL D+Y AAGR+ EA+++R  M + GA+K  G SWV
Sbjct: 602  DVEMGERVLKKLIELKPDEGGYYILLRDIYVAAGRRAEAIELRRAMDVNGAKKTLGCSWV 661

Query: 278  G 276
            G
Sbjct: 662  G 662



 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 42/169 (24%), Positives = 83/169 (49%), Gaps = 2/169 (1%)
 Frame = -3

Query: 818 KSLITWNSMISALANHGNVEEAVGLFHNMVYSGVRPDGVTFLALLAAYTHNGLVDEGCRL 639
           + +++W  M+S  A      EA+ LF  M   GVRPD V  +++++A T  G ++ G  +
Sbjct: 381 RDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSVISACTSLGDLETGFEV 440

Query: 638 FQSMQSDYGIEAGIEHYGCMVDMLGRAGLLEEAYELITTMPIPSNDVVWGALLGACRIYG 459
            + +  + G    +     ++DM  + G ++ A+++   M   S  + W +++ AC  +G
Sbjct: 441 HRYIDEN-GFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSL-ITWNSMISACANHG 498

Query: 458 NIDMGERVVKKLL--ELKPDEGGYYILLSDMYAAAGRQVEAMKMRETMK 318
           N +   RV   +L   ++PD G  ++ L   Y   G   +   + E+M+
Sbjct: 499 NAEDAFRVFTLMLYSGIRPD-GVTFLALLTAYTHKGWVDDGYGLFESMQ 546


>emb|CBI22251.3| unnamed protein product [Vitis vinifera]
          Length = 476

 Score =  281 bits (718), Expect = 2e-73
 Identities = 132/181 (72%), Positives = 155/181 (85%)
 Frame = -3

Query: 818 KSLITWNSMISALANHGNVEEAVGLFHNMVYSGVRPDGVTFLALLAAYTHNGLVDEGCRL 639
           KSLITWNSMISA ANHGN E+A  +F  M+YSG+RPDGVTFLALL AYTH G VD+G  L
Sbjct: 295 KSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDGVTFLALLTAYTHKGWVDDGYGL 354

Query: 638 FQSMQSDYGIEAGIEHYGCMVDMLGRAGLLEEAYELITTMPIPSNDVVWGALLGACRIYG 459
           F+SMQ DYG+EAG+EHYGCMVDMLGRAG LEEAY+LIT+M +P NDVVWGALL ACRIYG
Sbjct: 355 FESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDVVWGALLAACRIYG 414

Query: 458 NIDMGERVVKKLLELKPDEGGYYILLSDMYAAAGRQVEAMKMRETMKIVGAQKNTGISWV 279
           +++MGERV+KKL+ELKPDEGGYYILL D+Y AAGR+ EA+++R  M + GA+K  G SWV
Sbjct: 415 DVEMGERVLKKLIELKPDEGGYYILLRDIYVAAGRRAEAIELRRAMDVNGAKKTLGCSWV 474

Query: 278 G 276
           G
Sbjct: 475 G 475



 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 42/169 (24%), Positives = 83/169 (49%), Gaps = 2/169 (1%)
 Frame = -3

Query: 818 KSLITWNSMISALANHGNVEEAVGLFHNMVYSGVRPDGVTFLALLAAYTHNGLVDEGCRL 639
           + +++W  M+S  A      EA+ LF  M   GVRPD V  +++++A T  G ++ G  +
Sbjct: 194 RDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSVISACTSLGDLETGFEV 253

Query: 638 FQSMQSDYGIEAGIEHYGCMVDMLGRAGLLEEAYELITTMPIPSNDVVWGALLGACRIYG 459
            + +  + G    +     ++DM  + G ++ A+++   M   S  + W +++ AC  +G
Sbjct: 254 HRYIDEN-GFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSL-ITWNSMISACANHG 311

Query: 458 NIDMGERVVKKLL--ELKPDEGGYYILLSDMYAAAGRQVEAMKMRETMK 318
           N +   RV   +L   ++PD G  ++ L   Y   G   +   + E+M+
Sbjct: 312 NAEDAFRVFTLMLYSGIRPD-GVTFLALLTAYTHKGWVDDGYGLFESMQ 359


>ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530484|gb|EEF32367.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 499

 Score =  279 bits (714), Expect = 5e-73
 Identities = 136/181 (75%), Positives = 151/181 (83%)
 Frame = -3

Query: 818 KSLITWNSMISALANHGNVEEAVGLFHNMVYSGVRPDGVTFLALLAAYTHNGLVDEGCRL 639
           KSLITWNSMISA ANHG  E+A  LF  M+ SG+ PDG+TFLALL AYTH GLVDEG RL
Sbjct: 318 KSLITWNSMISACANHGYAEDAFELFSCMLNSGIAPDGITFLALLIAYTHKGLVDEGYRL 377

Query: 638 FQSMQSDYGIEAGIEHYGCMVDMLGRAGLLEEAYELITTMPIPSNDVVWGALLGACRIYG 459
           FQ M+ DYGIEA IEHYGC+VDMLGRAG LEEAYELI TMPIPSND+VWGALL ACRIYG
Sbjct: 378 FQIMERDYGIEASIEHYGCIVDMLGRAGRLEEAYELIVTMPIPSNDIVWGALLAACRIYG 437

Query: 458 NIDMGERVVKKLLELKPDEGGYYILLSDMYAAAGRQVEAMKMRETMKIVGAQKNTGISWV 279
           +++MGERVVKKLLELKPDEGGYYILL D+Y A+GR  EA  +R+ M+  GA KN G SWV
Sbjct: 438 DVNMGERVVKKLLELKPDEGGYYILLRDIYVASGRTAEANHIRQAMQESGAMKNPGYSWV 497

Query: 278 G 276
           G
Sbjct: 498 G 498



 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 40/169 (23%), Positives = 83/169 (49%), Gaps = 2/169 (1%)
 Frame = -3

Query: 818 KSLITWNSMISALANHGNVEEAVGLFHNMVYSGVRPDGVTFLALLAAYTHNGLVDEGCRL 639
           K +++W +M+S  +      EA+ LF  M  +G+RPD VT +++++A T+ G V+ G  +
Sbjct: 217 KDVVSWTAMVSGYSKANCSREALELFWEMSDAGIRPDEVTIVSVISACTNLGDVETGMNV 276

Query: 638 FQSMQSDYGIEAGIEHYGCMVDMLGRAGLLEEAYELITTMPIPSNDVVWGALLGACRIYG 459
             S  ++ G    +     +++M  + G ++ A+ +   M   S  + W +++ AC  +G
Sbjct: 277 -HSYINENGFGWMVSLCNALINMYAKCGCVDRAWRVFNNMKRKSL-ITWNSMISACANHG 334

Query: 458 NIDMGERVVKKLLE--LKPDEGGYYILLSDMYAAAGRQVEAMKMRETMK 318
             +    +   +L   + PD G  ++ L   Y   G   E  ++ + M+
Sbjct: 335 YAEDAFELFSCMLNSGIAPD-GITFLALLIAYTHKGLVDEGYRLFQIME 382


>emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
          Length = 722

 Score =  278 bits (710), Expect = 1e-72
 Identities = 131/181 (72%), Positives = 154/181 (85%)
 Frame = -3

Query: 818  KSLITWNSMISALANHGNVEEAVGLFHNMVYSGVRPDGVTFLALLAAYTHNGLVDEGCRL 639
            KSLITWNSMISA ANHGN E+A  +F  M+ SG+RPDGVTFLALL AYTH G VD+G  L
Sbjct: 541  KSLITWNSMISACANHGNAEDAFRVFTLMLXSGIRPDGVTFLALLTAYTHKGWVDDGYGL 600

Query: 638  FQSMQSDYGIEAGIEHYGCMVDMLGRAGLLEEAYELITTMPIPSNDVVWGALLGACRIYG 459
            F+SMQ DYG+EAG+EHYGCMVDMLGRAG LEEAY+LIT+M +P NDVVWGALL ACRIYG
Sbjct: 601  FESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDVVWGALLAACRIYG 660

Query: 458  NIDMGERVVKKLLELKPDEGGYYILLSDMYAAAGRQVEAMKMRETMKIVGAQKNTGISWV 279
            +++MGERV+KKL+ELKPDEGGYYILL D+Y AAGR+ EA+++R  M + GA+K  G SWV
Sbjct: 661  DVEMGERVLKKLIELKPDEGGYYILLRDIYVAAGRRAEAIELRRAMDVNGAKKTLGCSWV 720

Query: 278  G 276
            G
Sbjct: 721  G 721



 Score = 61.2 bits (147), Expect = 3e-07
 Identities = 42/169 (24%), Positives = 82/169 (48%), Gaps = 2/169 (1%)
 Frame = -3

Query: 818 KSLITWNSMISALANHGNVEEAVGLFHNMVYSGVRPDGVTFLALLAAYTHNGLVDEGCRL 639
           + +++W  M+S  A      EA+ LF  M   GVRPD V  + +++A T  G ++ G  +
Sbjct: 440 RDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVIVISACTSLGDLETGFEV 499

Query: 638 FQSMQSDYGIEAGIEHYGCMVDMLGRAGLLEEAYELITTMPIPSNDVVWGALLGACRIYG 459
            + +  + G    +     ++DM  + G ++ A+++   M   S  + W +++ AC  +G
Sbjct: 500 HRYIDEN-GFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSL-ITWNSMISACANHG 557

Query: 458 NIDMGERVVKKLLE--LKPDEGGYYILLSDMYAAAGRQVEAMKMRETMK 318
           N +   RV   +L   ++PD G  ++ L   Y   G   +   + E+M+
Sbjct: 558 NAEDAFRVFTLMLXSGIRPD-GVTFLALLTAYTHKGWVDDGYGLFESMQ 605


>ref|XP_003601393.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|358344321|ref|XP_003636238.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
           gi|355490441|gb|AES71644.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
           gi|355502173|gb|AES83376.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 486

 Score =  262 bits (669), Expect = 8e-68
 Identities = 125/180 (69%), Positives = 145/180 (80%)
 Frame = -3

Query: 818 KSLITWNSMISALANHGNVEEAVGLFHNMVYSGVRPDGVTFLALLAAYTHNGLVDEGCRL 639
           KSLITWN+M+   ANHG  E+A  LF  M+ SGV PDGVT LALL AY H G VDEG RL
Sbjct: 305 KSLITWNAMMMVCANHGYAEDAFRLFEGMIGSGVVPDGVTILALLVAYAHKGFVDEGIRL 364

Query: 638 FQSMQSDYGIEAGIEHYGCMVDMLGRAGLLEEAYELITTMPIPSNDVVWGALLGACRIYG 459
           F+SMQ DYG+E  IEHYG +VDMLGR+G L+EAY L+T+MPIPSNDV+WGALLGACRI+G
Sbjct: 365 FESMQRDYGVEPRIEHYGAVVDMLGRSGRLQEAYNLLTSMPIPSNDVIWGALLGACRIHG 424

Query: 458 NIDMGERVVKKLLELKPDEGGYYILLSDMYAAAGRQVEAMKMRETMKIVGAQKNTGISWV 279
           ++ MGERV+KKLLELKPDEGGYYILL D+Y AAGR  EA +MR+ M   GA+KN G SWV
Sbjct: 425 DVGMGERVIKKLLELKPDEGGYYILLRDIYVAAGRTAEANEMRQAMLASGARKNPGCSWV 484



 Score = 60.1 bits (144), Expect = 6e-07
 Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 2/169 (1%)
 Frame = -3

Query: 818 KSLITWNSMISALANHGNVEEAVGLFHNMVYSGVRPDGVTFLALLAAYTHNGLVDEGCRL 639
           + +++W  M+SA +      E + LF  M  +GV PD VT L++++A    G  + G R+
Sbjct: 204 RDVVSWTIMLSAYSKAKRPHETLDLFQEMRLAGVWPDEVTVLSVISACAELGDAEMG-RM 262

Query: 638 FQSMQSDYGIEAGIEHYGCMVDMLGRAGLLEEAYELITTMPIPSNDVVWGALLGACRIYG 459
                 + G    +     ++DM G+ G LEEA+++       S  + W A++  C  +G
Sbjct: 263 VHKFVEENGFGWMVALCNSLIDMYGKCGCLEEAWQVFDRTKRKSL-ITWNAMMMVCANHG 321

Query: 458 NIDMGERVVKKLL--ELKPDEGGYYILLSDMYAAAGRQVEAMKMRETMK 318
             +   R+ + ++   + PD G   + L   YA  G   E +++ E+M+
Sbjct: 322 YAEDAFRLFEGMIGSGVVPD-GVTILALLVAYAHKGFVDEGIRLFESMQ 369