BLASTX nr result
ID: Coptis23_contig00030948
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00030948
(599 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002523406.1| RNA binding protein, putative [Ricinus commu... 288 7e-76
ref|XP_002297618.1| predicted protein [Populus trichocarpa] gi|2... 280 1e-73
emb|CBI16556.3| unnamed protein product [Vitis vinifera] 270 2e-70
ref|XP_002283747.1| PREDICTED: pumilio homolog 12-like [Vitis vi... 270 2e-70
emb|CAN75787.1| hypothetical protein VITISV_041015 [Vitis vinifera] 267 1e-69
>ref|XP_002523406.1| RNA binding protein, putative [Ricinus communis]
gi|223537356|gb|EEF38985.1| RNA binding protein, putative
[Ricinus communis]
Length = 771
Score = 288 bits (736), Expect = 7e-76
Identities = 138/197 (70%), Positives = 169/197 (85%)
Frame = +2
Query: 8 QILHAITRKPGDLVRISLDMHGTRAVQKVIETLRSPEQFSLVVSSLKPGIVNLMKDTNGN 187
QIL AITRK G+LVRIS DMHGTRAVQKVIETL++P+QFS+VVSSLKPGIV L+K+ NGN
Sbjct: 490 QILCAITRKAGELVRISCDMHGTRAVQKVIETLKTPQQFSMVVSSLKPGIVTLIKNMNGN 549
Query: 188 HVAQRCLQHLLPEYKEYLFEDAIAHCSKLAKDRHACCVLQKCLTHCDGEHRRHLVSGITS 367
HVAQRCLQ+L PE+ E+LFE A +C +LA DRH CCVLQKCL+H +GE RR L+S ITS
Sbjct: 550 HVAQRCLQYLTPEHSEFLFEAATTNCVELATDRHGCCVLQKCLSHSEGEQRRCLISEITS 609
Query: 368 DALSLSQNQYGNYVVQFVFELQLPWVTIGVLDKLEGSYGYLSMQKYSSNVVEKCLKFAGE 547
+AL LSQ+ +GNYVVQFVFEL+LPW T +LD+LEG+YG LSMQKYSSNV+EKCLK+A E
Sbjct: 610 NALILSQDPFGNYVVQFVFELRLPWATANILDQLEGNYGDLSMQKYSSNVIEKCLKYASE 669
Query: 548 DRRPRIVQELVSDSRLD 598
+ R I+++L+S++ LD
Sbjct: 670 EHRAHIIRQLISNTHLD 686
>ref|XP_002297618.1| predicted protein [Populus trichocarpa] gi|222844876|gb|EEE82423.1|
predicted protein [Populus trichocarpa]
Length = 620
Score = 280 bits (716), Expect = 1e-73
Identities = 141/204 (69%), Positives = 168/204 (82%), Gaps = 7/204 (3%)
Frame = +2
Query: 8 QILHAITRKPGDLVRISLDMHGTRAVQKVIETLRSPEQFSLVVSSLKPGIVNLMKDTNGN 187
QIL ITRK G+LVRIS DMHGTRAVQKVIETL++PEQFS+VVS+LKP IV L+K+ NGN
Sbjct: 362 QILRTITRKAGELVRISCDMHGTRAVQKVIETLKTPEQFSMVVSALKPCIVTLIKNMNGN 421
Query: 188 HVAQRCLQHLLPEYKEYLFEDAIAHCSKLAKDRHACCVLQKCLTHCDGEHRRHLVSGITS 367
HVAQRCLQ+L+PEY E+LFE A+C +LA DRH CCVLQKCL+ GE RR LVS ITS
Sbjct: 422 HVAQRCLQYLMPEYSEFLFEATTANCVELATDRHGCCVLQKCLSQSKGEQRRCLVSEITS 481
Query: 368 DALSLSQNQYG-------NYVVQFVFELQLPWVTIGVLDKLEGSYGYLSMQKYSSNVVEK 526
+AL LSQ+ +G NYVVQFVFEL+LPW +LD+LEG+YG LS+QKYSSNVVEK
Sbjct: 482 NALILSQDPFGYCIFLFSNYVVQFVFELRLPWAATDILDQLEGNYGDLSVQKYSSNVVEK 541
Query: 527 CLKFAGEDRRPRIVQELVSDSRLD 598
CLK+AGE RR RI++EL+++SRLD
Sbjct: 542 CLKYAGEVRRTRIIRELINNSRLD 565
>emb|CBI16556.3| unnamed protein product [Vitis vinifera]
Length = 722
Score = 270 bits (689), Expect = 2e-70
Identities = 132/197 (67%), Positives = 163/197 (82%)
Frame = +2
Query: 8 QILHAITRKPGDLVRISLDMHGTRAVQKVIETLRSPEQFSLVVSSLKPGIVNLMKDTNGN 187
QILHAITR+ GDLVRIS +MHGTRAVQKVIETLR+ EQFS++VSSLKPGIV L+KD NGN
Sbjct: 473 QILHAITRRAGDLVRISCNMHGTRAVQKVIETLRTSEQFSMIVSSLKPGIVTLIKDMNGN 532
Query: 188 HVAQRCLQHLLPEYKEYLFEDAIAHCSKLAKDRHACCVLQKCLTHCDGEHRRHLVSGITS 367
HVAQ CLQ+L+PEY+E+LFE AI +C +LA DRH CCVLQKCL H E R ++ ITS
Sbjct: 533 HVAQCCLQNLMPEYREFLFEAAITNCVELATDRHGCCVLQKCLGHSAVEQRDRIIYEITS 592
Query: 368 DALSLSQNQYGNYVVQFVFELQLPWVTIGVLDKLEGSYGYLSMQKYSSNVVEKCLKFAGE 547
+AL LSQ+ +GNYVVQ+VFE PW + +LD+LEG+YG LS+QKYSSNVVEKCL+ AG+
Sbjct: 593 NALILSQDPFGNYVVQYVFE--FPWAIVDILDQLEGNYGDLSLQKYSSNVVEKCLQHAGD 650
Query: 548 DRRPRIVQELVSDSRLD 598
+ R I+QEL+++ R+D
Sbjct: 651 EHRHCIIQELINNPRID 667
>ref|XP_002283747.1| PREDICTED: pumilio homolog 12-like [Vitis vinifera]
Length = 711
Score = 270 bits (689), Expect = 2e-70
Identities = 132/197 (67%), Positives = 163/197 (82%)
Frame = +2
Query: 8 QILHAITRKPGDLVRISLDMHGTRAVQKVIETLRSPEQFSLVVSSLKPGIVNLMKDTNGN 187
QILHAITR+ GDLVRIS +MHGTRAVQKVIETLR+ EQFS++VSSLKPGIV L+KD NGN
Sbjct: 462 QILHAITRRAGDLVRISCNMHGTRAVQKVIETLRTSEQFSMIVSSLKPGIVTLIKDMNGN 521
Query: 188 HVAQRCLQHLLPEYKEYLFEDAIAHCSKLAKDRHACCVLQKCLTHCDGEHRRHLVSGITS 367
HVAQ CLQ+L+PEY+E+LFE AI +C +LA DRH CCVLQKCL H E R ++ ITS
Sbjct: 522 HVAQCCLQNLMPEYREFLFEAAITNCVELATDRHGCCVLQKCLGHSAVEQRDRIIYEITS 581
Query: 368 DALSLSQNQYGNYVVQFVFELQLPWVTIGVLDKLEGSYGYLSMQKYSSNVVEKCLKFAGE 547
+AL LSQ+ +GNYVVQ+VFE PW + +LD+LEG+YG LS+QKYSSNVVEKCL+ AG+
Sbjct: 582 NALILSQDPFGNYVVQYVFE--FPWAIVDILDQLEGNYGDLSLQKYSSNVVEKCLQHAGD 639
Query: 548 DRRPRIVQELVSDSRLD 598
+ R I+QEL+++ R+D
Sbjct: 640 EHRHCIIQELINNPRID 656
>emb|CAN75787.1| hypothetical protein VITISV_041015 [Vitis vinifera]
Length = 1051
Score = 267 bits (682), Expect = 1e-69
Identities = 131/197 (66%), Positives = 162/197 (82%)
Frame = +2
Query: 8 QILHAITRKPGDLVRISLDMHGTRAVQKVIETLRSPEQFSLVVSSLKPGIVNLMKDTNGN 187
QILHAITR+ GDLVRIS +MHGTRAVQKVIETLR+ EQFS++VSSLKPGIV L+KD NGN
Sbjct: 503 QILHAITRRAGDLVRISCNMHGTRAVQKVIETLRTSEQFSMIVSSLKPGIVTLIKDMNGN 562
Query: 188 HVAQRCLQHLLPEYKEYLFEDAIAHCSKLAKDRHACCVLQKCLTHCDGEHRRHLVSGITS 367
HVAQ CLQ+L+PEY+E+L E AI +C +LA DRH CCVLQKCL H E R ++ ITS
Sbjct: 563 HVAQCCLQNLMPEYREFLXEAAITNCVELATDRHGCCVLQKCLGHSAVEQRDRIIYEITS 622
Query: 368 DALSLSQNQYGNYVVQFVFELQLPWVTIGVLDKLEGSYGYLSMQKYSSNVVEKCLKFAGE 547
+AL LSQ+ +GNYVVQ+VFE PW + +LD+LEG+YG LS+QKYSSNVVEKCL+ AG+
Sbjct: 623 NALILSQDPFGNYVVQYVFE--FPWAIVDILDQLEGNYGDLSLQKYSSNVVEKCLQHAGD 680
Query: 548 DRRPRIVQELVSDSRLD 598
+ R I+QEL+++ R+D
Sbjct: 681 EHRHCIIQELINNPRID 697