BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030914
         (466 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containi...   239   2e-61
ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containi...   236   1e-60
ref|XP_002516590.1| pentatricopeptide repeat-containing protein,...   232   3e-59
ref|XP_002324255.1| predicted protein [Populus trichocarpa] gi|2...   226   1e-57
ref|XP_003603587.1| Pentatricopeptide repeat-containing protein ...   224   4e-57

>ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  239 bits (609), Expect = 2e-61
 Identities = 112/155 (72%), Positives = 131/155 (84%)
 Frame = -2

Query: 465 VSGHARLGQMRRARAIFDAMPEKTIVSWTTLISGYTRIGCYAEALDVFRGMQVVGMKPDE 286
           +SGH RLGQMRRARAIF+ M +KTI SWT ++SGY RIGCYA+AL+ FR MQ+VG++PDE
Sbjct: 190 ISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDE 249

Query: 285 ISIVAVLPACAQLGAFELGKWIHIYASKNELIQKTCICNALIEMYSKCGSIDQALELFGL 106
           IS+V+VLP CAQLGA ELGKWIHIYA K   ++  C+CNALIEMY+KCGSIDQ   LF  
Sbjct: 250 ISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQ 309

Query: 105 MLDRDVISWSTMIAGLANHGRAREAIQLFAEMEKA 1
           M +RDVISWSTMI GLANHGRAREAI+LF EM+KA
Sbjct: 310 MKERDVISWSTMIVGLANHGRAREAIELFQEMQKA 344



 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 7/153 (4%)
 Frame = -2

Query: 444 GQMRRARAIFDAMPEKTIVSWTTLISGYTRIGCYAEALDVFRGMQVVG-------MKPDE 286
           G+   A  +F  + +     +  +I  Y     Y  A+ V++  Q++G       + PD+
Sbjct: 60  GETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYK--QMLGNPHGENPIFPDK 117

Query: 285 ISIVAVLPACAQLGAFELGKWIHIYASKNELIQKTCICNALIEMYSKCGSIDQALELFGL 106
            +   V+ +CA L  ++LGK +H +  K      T + N+L+EMY KC S+D A  +F  
Sbjct: 118 FTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEE 177

Query: 105 MLDRDVISWSTMIAGLANHGRAREAIQLFAEME 7
           M +RD +SW+T+I+G    G+ R A  +F EM+
Sbjct: 178 MTERDAVSWNTLISGHVRLGQMRRARAIFEEMQ 210



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 2/145 (1%)
 Frame = -2

Query: 456 HARLGQMRRARAIFDAMPEKTIVSWTTLISGYTRIGCYAEALDVFRGMQVVGMKPDEISI 277
           +A+ G + + R +FD M E+ ++SW+T+I G    G   EA+++F+ MQ   ++P  I+ 
Sbjct: 294 YAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITF 353

Query: 276 VAVLPACAQLGAFELG-KWIHIYASKNELIQKTCICNALIEMYSKCGSIDQALELFGLML 100
           V +L ACA  G    G ++         +         L+ +    G +DQALEL   M 
Sbjct: 354 VGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMP 413

Query: 99  DR-DVISWSTMIAGLANHGRAREAI 28
            + D   W ++++   +HG  + A+
Sbjct: 414 RKPDSPIWGSLLSSCRSHGNLKIAV 438


>ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  236 bits (602), Expect = 1e-60
 Identities = 110/155 (70%), Positives = 130/155 (83%)
 Frame = -2

Query: 465 VSGHARLGQMRRARAIFDAMPEKTIVSWTTLISGYTRIGCYAEALDVFRGMQVVGMKPDE 286
           +SGH RLGQMRRARAIF+ M +KTI SWT ++SGY RIGCYA+AL+ FR MQ+VG++PDE
Sbjct: 190 ISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDE 249

Query: 285 ISIVAVLPACAQLGAFELGKWIHIYASKNELIQKTCICNALIEMYSKCGSIDQALELFGL 106
           IS+V+VLPACAQLGA ELGKWIH YA K   ++  C+CNALIEMY+KCGSID+   LF  
Sbjct: 250 ISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQ 309

Query: 105 MLDRDVISWSTMIAGLANHGRAREAIQLFAEMEKA 1
           M +RDVISWSTMI GLANHGRA EAI+LF EM+KA
Sbjct: 310 MNERDVISWSTMIVGLANHGRAHEAIELFQEMQKA 344



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 7/148 (4%)
 Frame = -2

Query: 429 ARAIFDAMPEKTIVSWTTLISGYTRIGCYAEALDVFRGMQVVGMK-------PDEISIVA 271
           A  +F  + +     +  +I  Y     Y  A+ V++  Q++G         PD+ +   
Sbjct: 65  ANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYK--QMLGHSHGENPIFPDKFTFPF 122

Query: 270 VLPACAQLGAFELGKWIHIYASKNELIQKTCICNALIEMYSKCGSIDQALELFGLMLDRD 91
           V+ +CA L  ++LGK +H +  K      T + N+L+EMY KC S+D A ++F  M +RD
Sbjct: 123 VVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERD 182

Query: 90  VISWSTMIAGLANHGRAREAIQLFAEME 7
            +SW+T+I+G    G+ R A  +F EM+
Sbjct: 183 AVSWNTLISGHVRLGQMRRARAIFEEMQ 210



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 2/145 (1%)
 Frame = -2

Query: 456 HARLGQMRRARAIFDAMPEKTIVSWTTLISGYTRIGCYAEALDVFRGMQVVGMKPDEISI 277
           +A+ G +   R +FD M E+ ++SW+T+I G    G   EA+++F+ MQ   ++P+ I+ 
Sbjct: 294 YAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITF 353

Query: 276 VAVLPACAQLGAFELG-KWIHIYASKNELIQKTCICNALIEMYSKCGSIDQALELFGLM- 103
           V +L ACA  G    G ++         +         L+ +    G +DQALEL   M 
Sbjct: 354 VGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMP 413

Query: 102 LDRDVISWSTMIAGLANHGRAREAI 28
           +  D   W ++++   +H     A+
Sbjct: 414 MKPDSAIWGSLLSSCRSHSNLEIAV 438


>ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544410|gb|EEF45931.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 517

 Score =  232 bits (591), Expect = 3e-59
 Identities = 106/154 (68%), Positives = 130/154 (84%)
 Frame = -2

Query: 465 VSGHARLGQMRRARAIFDAMPEKTIVSWTTLISGYTRIGCYAEALDVFRGMQVVGMKPDE 286
           +SGH RLGQMRRARA+FD MP +TIVSWT +ISGYTRIG Y +ALDVFR MQ+ G++PDE
Sbjct: 168 ISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDE 227

Query: 285 ISIVAVLPACAQLGAFELGKWIHIYASKNELIQKTCICNALIEMYSKCGSIDQALELFGL 106
            SI++VLPACA+LGA E GKWIH++ ++N L+++TCICNALIEMY+KCG IDQA +LF  
Sbjct: 228 ASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQ 287

Query: 105 MLDRDVISWSTMIAGLANHGRAREAIQLFAEMEK 4
           M  RDVISWSTMI GLANHG+ REAI +F  M++
Sbjct: 288 MRGRDVISWSTMIGGLANHGKVREAIAIFERMKQ 321



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 46/121 (38%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
 Frame = -2

Query: 354 IGCYAEALDVFRGMQVVG--MKPDEISIVAVLPACAQLGAFELGKWIHI----YASKNEL 193
           I  Y + L  +R  Q     + PDE +   V+ ACA+LG   LGK +H     +  K+ L
Sbjct: 71  IDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHL 130

Query: 192 IQKTCICNALIEMYSKCGSIDQALELFGLMLDRDVISWSTMIAGLANHGRAREAIQLFAE 13
           I +    NALI+MY+KC ++  A  LF  M +R  ISW+ +I+G    G+ R A  LF E
Sbjct: 131 ITE----NALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDE 186

Query: 12  M 10
           M
Sbjct: 187 M 187



 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 2/153 (1%)
 Frame = -2

Query: 456 HARLGQMRRARAIFDAMPEKTIVSWTTLISGYTRIGCYAEALDVFRGMQVVGMKPDEISI 277
           + + G + +A  +FD M  + ++SW+T+I G    G   EA+ +F  M+   +KP+ I+ 
Sbjct: 272 YTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITF 331

Query: 276 VAVLPACAQLGAFELGKWIHIYASKNELIQKTC-ICNALIEMYSKCGSIDQALELFGLM- 103
           V +L ACA  G +E G        K+  I+       +L+++  + G + QAL++   M 
Sbjct: 332 VGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMP 391

Query: 102 LDRDVISWSTMIAGLANHGRAREAIQLFAEMEK 4
           +  D   W ++++    H     A+     +E+
Sbjct: 392 MKPDSKIWGSLLSSCRTHCNIEVAVIAMEHLEE 424


>ref|XP_002324255.1| predicted protein [Populus trichocarpa] gi|222865689|gb|EEF02820.1|
           predicted protein [Populus trichocarpa]
          Length = 547

 Score =  226 bits (577), Expect = 1e-57
 Identities = 107/155 (69%), Positives = 130/155 (83%)
 Frame = -2

Query: 465 VSGHARLGQMRRARAIFDAMPEKTIVSWTTLISGYTRIGCYAEALDVFRGMQVVGMKPDE 286
           +SGH  +GQMR+A A+FD MP +TIVSWT +ISGYTR+G YA+AL VFR MQ+VG++PDE
Sbjct: 192 ISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDE 251

Query: 285 ISIVAVLPACAQLGAFELGKWIHIYASKNELIQKTCICNALIEMYSKCGSIDQALELFGL 106
           ISI++VLPACAQLGA E+GKWIH+Y  +N L++KT ICNAL+EMYSKCG I QA +LF  
Sbjct: 252 ISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQ 311

Query: 105 MLDRDVISWSTMIAGLANHGRAREAIQLFAEMEKA 1
           M   DVISWSTMI GLANHG+AREAI+LF  M+KA
Sbjct: 312 MSKGDVISWSTMIGGLANHGKAREAIELFKRMKKA 346



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 7/144 (4%)
 Frame = -2

Query: 429 ARAIFDAMPEKTIVSWTTLISGYTRIGCYAEALDVFRGMQVVG-------MKPDEISIVA 271
           A  +F  + E     +  +I  +T    YA A+  ++ M  +        + PD  +   
Sbjct: 65  ASLLFKQVKEPNGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPF 124

Query: 270 VLPACAQLGAFELGKWIHIYASKNELIQKTCICNALIEMYSKCGSIDQALELFGLMLDRD 91
           V+ +C+ L  + LGK +H +  K        + NALI+MY+KC S+  A ++F  M++RD
Sbjct: 125 VIKSCSGLVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERD 184

Query: 90  VISWSTMIAGLANHGRAREAIQLF 19
            ISW+++I+G    G+ R+A  LF
Sbjct: 185 AISWNSIISGHVGVGQMRKAGALF 208



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 38/153 (24%), Positives = 78/153 (50%), Gaps = 2/153 (1%)
 Frame = -2

Query: 456 HARLGQMRRARAIFDAMPEKTIVSWTTLISGYTRIGCYAEALDVFRGMQVVGMKPDEISI 277
           +++ G + +A  +FD M +  ++SW+T+I G    G   EA+++F+ M+   ++P+ I+ 
Sbjct: 296 YSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITF 355

Query: 276 VAVLPACAQLGAFELGKWIHIYASKNELIQ-KTCICNALIEMYSKCGSIDQALELFGLM- 103
           + +L ACA  G +  G       SK+  I+ +      L+++  + G + QAL++   M 
Sbjct: 356 LGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMP 415

Query: 102 LDRDVISWSTMIAGLANHGRAREAIQLFAEMEK 4
           +  D   W ++++    H     AI     +E+
Sbjct: 416 MKPDSKIWGSLLSSCRTHSNLDIAIIAMEHLEE 448


>ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355492635|gb|AES73838.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  224 bits (572), Expect = 4e-57
 Identities = 105/154 (68%), Positives = 129/154 (83%)
 Frame = -2

Query: 465 VSGHARLGQMRRARAIFDAMPEKTIVSWTTLISGYTRIGCYAEALDVFRGMQVVGMKPDE 286
           + G+ +LGQM  AR +FD MP +TIVSWTT+I+GY R+GCY +ALDVFR MQ+VG++PDE
Sbjct: 184 IFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDE 243

Query: 285 ISIVAVLPACAQLGAFELGKWIHIYASKNELIQKTCICNALIEMYSKCGSIDQALELFGL 106
           ISI+AVLPACAQLGA E+GKWIH+YA KN  ++KT ICNALIEMY+KCG ID+A  LF  
Sbjct: 244 ISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQ 303

Query: 105 MLDRDVISWSTMIAGLANHGRAREAIQLFAEMEK 4
           ++++DVISWSTMI GLANHG+  EAIQLF EM K
Sbjct: 304 LVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCK 337



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 39/145 (26%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
 Frame = -2

Query: 456 HARLGQMRRARAIFDAMPEKTIVSWTTLISGYTRIGCYAEALDVFRGMQVVGMKPDEISI 277
           +A+ G +  A  +FD + EK ++SW+T+I G    G   EA+ +F  M  V + P+EI+ 
Sbjct: 288 YAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITF 347

Query: 276 VAVLPACAQLGAFELG-KWIHIYASKNELIQKTCICNALIEMYSKCGSIDQALELFGLM- 103
           + VL AC+  G ++ G K+  + ++   +  +      LI++  + G + QAL+    M 
Sbjct: 348 LGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMP 407

Query: 102 LDRDVISWSTMIAGLANHGRAREAI 28
           +  D   W+++++    H   + A+
Sbjct: 408 IKPDSRIWNSLLSSCRIHRNLQIAV 432



 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 3/149 (2%)
 Frame = -2

Query: 447 LGQMRRARAIFDAMPEKTIVSWTTLISGYTRIGCYAEALDVFRGM---QVVGMKPDEISI 277
           LG +  A  +F  +    I ++  +I  Y     ++ A+ VF  M       + PD+ + 
Sbjct: 55  LGHVSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTF 114

Query: 276 VAVLPACAQLGAFELGKWIHIYASKNELIQKTCICNALIEMYSKCGSIDQALELFGLMLD 97
             V+ +C  +    LG  +H    K          NALI+MY+K G +  A ++F  M  
Sbjct: 115 PFVIKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSH 174

Query: 96  RDVISWSTMIAGLANHGRAREAIQLFAEM 10
           RDVISW+++I G    G+   A +LF +M
Sbjct: 175 RDVISWNSLIFGYVKLGQMNSARELFDDM 203