BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030861
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002319940.1| predicted protein [Populus trichocarpa] gi|2...   105   3e-21
ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat...   103   1e-20
ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat...    99   4e-19
ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containi...    99   4e-19
ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat...    99   4e-19

>ref|XP_002319940.1| predicted protein [Populus trichocarpa] gi|222858316|gb|EEE95863.1|
           predicted protein [Populus trichocarpa]
          Length = 555

 Score =  105 bits (263), Expect = 3e-21
 Identities = 46/98 (46%), Positives = 71/98 (72%)
 Frame = +1

Query: 4   PIPTIYPFNQLLGTVMKMKRYYTVLSLIKVLSSVGIRQDIVTYSILTNVYCHVGRVDYGF 183
           P+P+I  F +L   +++MK Y TV+SL K +   GI  D+++ +IL N +C +  VDYGF
Sbjct: 87  PLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDYGF 146

Query: 184 SILGVVLKLGLEPDGVTFSTLLHGFFLQGKVEEAVSLF 297
           S+LG ++KLGLEP+ +TFSTL++GF ++GK+  A+ LF
Sbjct: 147 SVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELF 184



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 28/98 (28%), Positives = 55/98 (56%)
 Frame = +1

Query: 7   IPTIYPFNQLLGTVMKMKRYYTVLSLIKVLSSVGIRQDIVTYSILTNVYCHVGRVDYGFS 186
           +PT+  +  L+  +  + R+     L+  +    I  D+V +S+L ++ C  G V     
Sbjct: 263 LPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARV 322

Query: 187 ILGVVLKLGLEPDGVTFSTLLHGFFLQGKVEEAVSLFQ 300
           IL  + ++G+EPD  T++TL++G+ L+ +V EA  +F+
Sbjct: 323 ILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFE 360


>ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  103 bits (258), Expect = 1e-20
 Identities = 47/102 (46%), Positives = 71/102 (69%)
 Frame = +1

Query: 1   QPIPTIYPFNQLLGTVMKMKRYYTVLSLIKVLSSVGIRQDIVTYSILTNVYCHVGRVDYG 180
           QP P++  F ++L ++  MK Y TVLSL K + S+GI  D+ T +I+ N +CH+ RVD+G
Sbjct: 69  QPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFG 128

Query: 181 FSILGVVLKLGLEPDGVTFSTLLHGFFLQGKVEEAVSLFQKI 306
           FS+L  + KLG +PD  TF+TL+ G  ++GK+ EA+ LF K+
Sbjct: 129 FSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKM 170



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 26/100 (26%), Positives = 53/100 (53%)
 Frame = +1

Query: 7   IPTIYPFNQLLGTVMKMKRYYTVLSLIKVLSSVGIRQDIVTYSILTNVYCHVGRVDYGFS 186
           IP +  +  LL  + K +     ++++K +    +  DI +Y+I+ +  C VG ++    
Sbjct: 421 IPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGD 480

Query: 187 ILGVVLKLGLEPDGVTFSTLLHGFFLQGKVEEAVSLFQKI 306
           +   +   GL PD  T++ +++G  LQG + EA  LF+++
Sbjct: 481 LFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREM 520


>ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 47/102 (46%), Positives = 69/102 (67%)
 Frame = +1

Query: 1   QPIPTIYPFNQLLGTVMKMKRYYTVLSLIKVLSSVGIRQDIVTYSILTNVYCHVGRVDYG 180
           QP P+   FN+LL ++ KMK + T+LSL   + S GI  +I T  IL N +CH+ RV + 
Sbjct: 56  QPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFA 115

Query: 181 FSILGVVLKLGLEPDGVTFSTLLHGFFLQGKVEEAVSLFQKI 306
           FS+L  +LKLG +PD  TF+TL+ G +++GK+ EA+ LF K+
Sbjct: 116 FSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKM 157


>ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 47/101 (46%), Positives = 68/101 (67%)
 Frame = +1

Query: 4   PIPTIYPFNQLLGTVMKMKRYYTVLSLIKVLSSVGIRQDIVTYSILTNVYCHVGRVDYGF 183
           P P I+ F +LL ++ KMK Y TVLSL K + S GI  D+ T +I+ N +CH+ RVD+  
Sbjct: 52  PPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFAL 111

Query: 184 SILGVVLKLGLEPDGVTFSTLLHGFFLQGKVEEAVSLFQKI 306
           S+L  +LKLG +PD  TF+TL+ G  + GK+ EA+ +F K+
Sbjct: 112 SVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKM 152



 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 25/96 (26%), Positives = 56/96 (58%)
 Frame = +1

Query: 10  PTIYPFNQLLGTVMKMKRYYTVLSLIKVLSSVGIRQDIVTYSILTNVYCHVGRVDYGFSI 189
           P I+ +N L+  +  +  +  V +L+  +    I  ++V+ +I+ +  C  G+V     +
Sbjct: 194 PDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDV 253

Query: 190 LGVVLKLGLEPDGVTFSTLLHGFFLQGKVEEAVSLF 297
           + ++++ G+EPD VT++ L+ G  L+ +++EAV +F
Sbjct: 254 VDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVF 289


>ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 46/102 (45%), Positives = 70/102 (68%)
 Frame = +1

Query: 1   QPIPTIYPFNQLLGTVMKMKRYYTVLSLIKVLSSVGIRQDIVTYSILTNVYCHVGRVDYG 180
           +P P+I  F++LL ++ +MK Y TVLSL K + S GI  +  T +IL N +CH+ R+ + 
Sbjct: 49  RPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFA 108

Query: 181 FSILGVVLKLGLEPDGVTFSTLLHGFFLQGKVEEAVSLFQKI 306
           FS+LG +LKLG +P   TF+TL+ G  ++GK+ EA+ LF K+
Sbjct: 109 FSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKM 150