BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030847
         (947 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268968.1| PREDICTED: DNA repair protein XRCC3 homolog ...   248   2e-63
emb|CAN60498.1| hypothetical protein VITISV_027869 [Vitis vinifera]   248   2e-63
ref|XP_002531657.1| X-ray repair cross complementing protein 3, ...   244   2e-62
ref|XP_004150781.1| PREDICTED: DNA repair protein XRCC3 homolog ...   243   6e-62
ref|XP_002324475.1| predicted protein [Populus trichocarpa] gi|2...   229   9e-58

>ref|XP_002268968.1| PREDICTED: DNA repair protein XRCC3 homolog [Vitis vinifera]
          Length = 300

 Score =  248 bits (632), Expect = 2e-63
 Identities = 145/296 (48%), Positives = 171/296 (57%), Gaps = 6/296 (2%)
 Frame = +2

Query: 11  NPVNLSTSKCTTNCPALDKFLSGGIPTNSITELVSESSCGKTXXXXXXXXXXXXPLTRGG 190
           NP+ L+T KCT  CP LD+ L+GG+P NSITELV+ES  GKT            P + GG
Sbjct: 9   NPLALTTQKCTLGCPILDRCLAGGVPCNSITELVAESGSGKTQLCLQLVLSAQLPTSLGG 68

Query: 191 LSSSSLYIHTEFPFPIRRLHQXXXXXXXXXXXXXXXXXXXXXXXDHIFVRGVHSV----X 358
           L++SSLYIH+EFPFP RRL Q                       D + VRGV S      
Sbjct: 69  LAASSLYIHSEFPFPSRRLQQ---LSQSFRSSYSHVLDSEYNPLDFVLVRGVQSADQLFD 125

Query: 359 XXXXXXXXXXXXXQTSPVRFIVIDSIAALFRSEFDNTSKDLKRRSLYFFRIAAKLKMYAS 538
                           PVR IVIDSIAALFR EF+NT  DLKRRS  FF+I+ KLK  A 
Sbjct: 126 VLLKMDSVLLRPPTQLPVRLIVIDSIAALFRGEFENTPFDLKRRSSLFFKISGKLKALAE 185

Query: 539 KFDLAVLVTNQVVDVIEXXXXXXXXXXXXXXXCLFSSGRRVCPALGLSWANCVNTRLFLS 718
           +F LAV+VTNQVVD +                 L+SSGRRVC ALGLSWANCVN+RLFLS
Sbjct: 186 RFGLAVVVTNQVVDFV-GQAGGLNGLRVGNLGSLWSSGRRVCAALGLSWANCVNSRLFLS 244

Query: 719 RNEEVIXXXXXXXXXXXXXVVR--TRRKLQVVFAPHLPESSCEYVVLREGMFGLTR 880
           RNEE++              V   TRR L V+FAPHLPESSCE+V+ REG+ G+ R
Sbjct: 245 RNEEIVGEVTGLGGVGAGDTVSRLTRRHLHVIFAPHLPESSCEFVISREGVLGVER 300


>emb|CAN60498.1| hypothetical protein VITISV_027869 [Vitis vinifera]
          Length = 2077

 Score =  248 bits (632), Expect = 2e-63
 Identities = 146/296 (49%), Positives = 172/296 (58%), Gaps = 6/296 (2%)
 Frame = +2

Query: 11   NPVNLSTSKCTTNCPALDKFLSGGIPTNSITELVSESSCGKTXXXXXXXXXXXXPLTRGG 190
            NP+ L+T KCT  CP LD+ L+GG+P NSITELV+ES  GKT            P + GG
Sbjct: 1786 NPLALTTQKCTLGCPILDRCLAGGVPCNSITELVAESGSGKTQLCLQLVLSAQLPTSLGG 1845

Query: 191  LSSSSLYIHTEFPFPIRRLHQXXXXXXXXXXXXXXXXXXXXXXXDHIFVRGVHSV----X 358
            L++SSLYIH+EFPFP RRL Q                       D + VRGV S      
Sbjct: 1846 LAASSLYIHSEFPFPSRRLQQ---LSQSFRSSYSHVLDSEYNPLDFVLVRGVQSADQLFD 1902

Query: 359  XXXXXXXXXXXXXQTSPVRFIVIDSIAALFRSEFDNTSKDLKRRSLYFFRIAAKLKMYAS 538
                            PVR IVIDSIAALFR EF+NT  DLKRRS  FF+I+ KLK  A 
Sbjct: 1903 VLLKMDSVLLRPPTQLPVRLIVIDSIAALFRGEFENTPFDLKRRSSLFFKISGKLKALAE 1962

Query: 539  KFDLAVLVTNQVVDVIEXXXXXXXXXXXXXXXCLFSSGRRVCPALGLSWANCVNTRLFLS 718
            +F LAV+VTNQVVD +                 L+SSGRRVC ALGLSWANCVN+RLFLS
Sbjct: 1963 RFGLAVVVTNQVVDFV-GQAGGLNGLRVGNLGSLWSSGRRVCAALGLSWANCVNSRLFLS 2021

Query: 719  RNEEVIXXXXXXXXXXXXXVVR--TRRKLQVVFAPHLPESSCEYVVLREGMFGLTR 880
            RNEE++              V   TRR L V+FAPHLPESSCE+V+ REG+ G+ R
Sbjct: 2022 RNEEIVXEVTGLGGVGAGDTVSRLTRRHLHVIFAPHLPESSCEFVISREGVLGVER 2077


>ref|XP_002531657.1| X-ray repair cross complementing protein 3, xrcc3, putative
           [Ricinus communis] gi|223528715|gb|EEF30727.1| X-ray
           repair cross complementing protein 3, xrcc3, putative
           [Ricinus communis]
          Length = 301

 Score =  244 bits (623), Expect = 2e-62
 Identities = 146/303 (48%), Positives = 177/303 (58%), Gaps = 12/303 (3%)
 Frame = +2

Query: 2   KPINPV--NLSTSKCTTNCPALDKFLSGGIPTNSITELVSESSCGKTXXXXXXXXXXXXP 175
           KP N V   + T KCT  CP LD+ L+GGIP NSITE+V+ES  GKT            P
Sbjct: 2   KPENLVFQPIPTQKCTLGCPILDRCLNGGIPCNSITEIVAESGTGKTQLCLQLSLYAQLP 61

Query: 176 LTRGGLSSSSLYIHTEFPFPIRRLHQXXXXXXXXXXXXXXXXXXXXXXX------DHIFV 337
           L+ GGLS+SSLY+HTEFPFP RRLHQ                             D+IFV
Sbjct: 62  LSLGGLSASSLYLHTEFPFPFRRLHQLSHSFQSQHPQIFINNNNNDTINNYDNPCDNIFV 121

Query: 338 RGVHSVXXXXXXXXXXXXXXQTS----PVRFIVIDSIAALFRSEFDNTSKDLKRRSLYFF 505
             V S                 S    PVR IVIDS+AALFRSEF+NT+ DLKRRS  FF
Sbjct: 122 HSVRSADYLFDIMPKIESFLVYSKTHLPVRLIVIDSVAALFRSEFENTATDLKRRSALFF 181

Query: 506 RIAAKLKMYASKFDLAVLVTNQVVDVIEXXXXXXXXXXXXXXXCLFSSGRRVCPALGLSW 685
           +I+AKL+  A +F+LAV+V+NQVVD +                 L+SSGRRVCPALGL+W
Sbjct: 182 KISAKLRALAWRFNLAVVVSNQVVDFV-GSGDGLNGARIGDLGSLYSSGRRVCPALGLAW 240

Query: 686 ANCVNTRLFLSRNEEVIXXXXXXXXXXXXXVVRTRRKLQVVFAPHLPESSCEYVVLREGM 865
           ANCVN+RLFLSR+E  +               +TRR+L VVFAPHLP SSCE+V+ REG+
Sbjct: 241 ANCVNSRLFLSRDENGMVDGAESGSFCS----QTRRRLHVVFAPHLPYSSCEFVIRREGV 296

Query: 866 FGL 874
           FG+
Sbjct: 297 FGI 299


>ref|XP_004150781.1| PREDICTED: DNA repair protein XRCC3 homolog [Cucumis sativus]
           gi|449506730|ref|XP_004162832.1| PREDICTED: DNA repair
           protein XRCC3 homolog [Cucumis sativus]
          Length = 294

 Score =  243 bits (619), Expect = 6e-62
 Identities = 139/288 (48%), Positives = 170/288 (59%), Gaps = 5/288 (1%)
 Frame = +2

Query: 26  STSKCTTNCPALDKFLSGGIPTNSITELVSESSCGKTXXXXXXXXXXXXPLTRGGLSSSS 205
           +T KCT  CP +D+ + GG+  +S+TE+V+ES CGKT            PL+ GGL++SS
Sbjct: 12  TTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQLPLSNGGLNASS 71

Query: 206 LYIHTEFPFPIRRLHQXXXXXXXXXXXXXXXXXXXXXXXDHIFVRGVHSVXXXXXXXXXX 385
           LYIHTEFPFP RRL Q                       DHIFV  VHS           
Sbjct: 72  LYIHTEFPFPFRRLQQ-------LSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDIMPKI 124

Query: 386 XXXXQTS----PVRFIVIDSIAALFRSEFDNTSKDLKRRSLYFFRIAAKLKMYASKFDLA 553
               +      P+R IVIDSIAALFRS+F+NT  DLKRRS  FF+I+ KLK+ A K+ LA
Sbjct: 125 ESSLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKKYSLA 184

Query: 554 VLVTNQVVDVIEXXXXXXXXXXXXXXXCLFSSGRRVCPALGLSWANCVNTRLFLSRNEEV 733
           V++TNQVVD++                 L SS RRVCPALGL+WANCVN+RLFLSRNEEV
Sbjct: 185 VVLTNQVVDLM-GSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRNEEV 243

Query: 734 IXXXXXXXXXXXXXV-VRTRRKLQVVFAPHLPESSCEYVVLREGMFGL 874
           +                RTRR L VVFAPHLP+SSCEYV+ REG+ G+
Sbjct: 244 VGEGEGMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGVVGV 291


>ref|XP_002324475.1| predicted protein [Populus trichocarpa] gi|222865909|gb|EEF03040.1|
           predicted protein [Populus trichocarpa]
          Length = 290

 Score =  229 bits (583), Expect = 9e-58
 Identities = 133/290 (45%), Positives = 168/290 (57%), Gaps = 4/290 (1%)
 Frame = +2

Query: 23  LSTSKCTTNCPALDKFLSGGIPTNSITELVSESSCGKTXXXXXXXXXXXXPLTRGGLSSS 202
           L   KC+  CP LD  + GGIP NSITE+V+ES  GKT            P   GGLS+S
Sbjct: 7   LPVEKCSLGCPILDCCMGGGIPCNSITEIVAESGSGKTQLCLQLSLRAQLPPFLGGLSAS 66

Query: 203 SLYIHTEFPFPIRRLHQXXXXXXXXXXXXXXXXXXXXXXXDHIFVRGVHSVXXXXXXXXX 382
           SLY++TEFPFP RRLHQ                       D IF++ V++          
Sbjct: 67  SLYLYTEFPFPTRRLHQ---LSSALQCQYPQIFVSNYDPCDSIFLQSVNTADQLLDIMPQ 123

Query: 383 XXXXXQTS----PVRFIVIDSIAALFRSEFDNTSKDLKRRSLYFFRIAAKLKMYASKFDL 550
                + S    PVR IVIDS+AALFR+EF+NT+ DL RRS  FF+I+ KLK +A +F+L
Sbjct: 124 VESFLENSKTRLPVRVIVIDSMAALFRAEFENTASDLIRRSSLFFKISGKLKEFAKRFNL 183

Query: 551 AVLVTNQVVDVIEXXXXXXXXXXXXXXXCLFSSGRRVCPALGLSWANCVNTRLFLSRNEE 730
            VLVTNQV+DV++                ++SSGRRVCPALGLSWANCVN+RLFLS++E 
Sbjct: 184 VVLVTNQVMDVVDSGEGLNEVRIGNLSG-MYSSGRRVCPALGLSWANCVNSRLFLSKDE- 241

Query: 731 VIXXXXXXXXXXXXXVVRTRRKLQVVFAPHLPESSCEYVVLREGMFGLTR 880
                             TRR+L VVFAPHLP+ SCE+V+ REG+ G+ R
Sbjct: 242 -YESGLVGGGESGFLSRETRRRLHVVFAPHLPDLSCEFVIRREGVVGVNR 290