BLASTX nr result
ID: Coptis23_contig00030746
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00030746
(430 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002870459.1| polyubiquitin [Arabidopsis lyrata subsp. lyr... 126 2e-27
gb|AFK43392.1| unknown [Medicago truncatula] 125 3e-27
gb|AFK41706.1| unknown [Medicago truncatula] 125 3e-27
ref|XP_003607659.1| Ubiquitin [Medicago truncatula] gi|355508714... 125 3e-27
ref|XP_003590494.1| Ubiquitin [Medicago truncatula] gi|355479542... 125 3e-27
>ref|XP_002870459.1| polyubiquitin [Arabidopsis lyrata subsp. lyrata]
gi|297316295|gb|EFH46718.1| polyubiquitin [Arabidopsis
lyrata subsp. lyrata]
Length = 537
Score = 126 bits (317), Expect = 2e-27
Identities = 85/155 (54%), Positives = 95/155 (61%), Gaps = 24/155 (15%)
Frame = +2
Query: 2 QIFVKSLTERRIIPAVECCDKSSDTIDTV---------IKANRQRLTFAGQQLE----LT 142
QIFVK+LT R I VE SSDTID V I A++QRL FAG+QLE L
Sbjct: 309 QIFVKTLTGRTITLEVE----SSDTIDNVKAKIQDKEEIPADQQRLIFAGKQLEDGRTLA 364
Query: 143 DYNIQDKSA----------MVIFVKTSTGKLFRFEVQSSYTVGSFKVKIKDSVGIRPDDQ 292
DYNIQ +S M IFVKT TGK EV+SS T+ + K KI+D GI PD Q
Sbjct: 365 DYNIQKESTLHLVLRLCGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 424
Query: 293 -LIFGGRQLEDDRTFGYYNIQNESTLHLVNRLRGG 394
LIF G+QLED RT YNIQ ESTLHLV RLRGG
Sbjct: 425 RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 459
Score = 124 bits (311), Expect = 8e-27
Identities = 83/155 (53%), Positives = 94/155 (60%), Gaps = 24/155 (15%)
Frame = +2
Query: 2 QIFVKSLTERRIIPAVECCDKSSDTIDTV---------IKANRQRLTFAGQQLE----LT 142
QIFVK+LT + I VE SSDTID V I ++QRL FAG+QLE L
Sbjct: 157 QIFVKTLTGKTITLEVE----SSDTIDNVKAKIEDKEGIPTDQQRLIFAGKQLEDGRTLA 212
Query: 143 DYNIQDKSA----------MVIFVKTSTGKLFRFEVQSSYTVGSFKVKIKDSVGIRPDDQ 292
DYNIQ +S M IFVKT TGK EV+SS T+ + K KI+D GI PD Q
Sbjct: 213 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNLKAKIQDKEGIPPDQQ 272
Query: 293 -LIFGGRQLEDDRTFGYYNIQNESTLHLVNRLRGG 394
LIF G+QLED RT YNIQ ESTLHLV RLRGG
Sbjct: 273 RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 307
Score = 123 bits (308), Expect = 2e-26
Identities = 83/155 (53%), Positives = 94/155 (60%), Gaps = 24/155 (15%)
Frame = +2
Query: 2 QIFVKSLTERRIIPAVECCDKSSDTIDTV---------IKANRQRLTFAGQQLE----LT 142
QIFVK+LT + I VE SSDTID V I ++QRL FAG+QLE L
Sbjct: 385 QIFVKTLTGKTITLEVE----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 440
Query: 143 DYNIQDKSA----------MVIFVKTSTGKLFRFEVQSSYTVGSFKVKIKDSVGIRPDDQ 292
DYNIQ +S M IFVKT TGK EV+SS T+ + K KI+D GI PD Q
Sbjct: 441 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIVPDQQ 500
Query: 293 -LIFGGRQLEDDRTFGYYNIQNESTLHLVNRLRGG 394
LIF G+QLED RT YNIQ ESTLHLV RLRGG
Sbjct: 501 RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 535
Score = 120 bits (300), Expect = 1e-25
Identities = 82/155 (52%), Positives = 93/155 (60%), Gaps = 24/155 (15%)
Frame = +2
Query: 2 QIFVKSLTERRIIPAVECCDKSSDTIDTV---------IKANRQRLTFAGQQLE----LT 142
QIFVK+LT + I VE SSDTID V I ++QRL FAG+QLE L
Sbjct: 81 QIFVKTLTGKTITLEVE----SSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLEDGRTLA 136
Query: 143 DYNIQDKSA----------MVIFVKTSTGKLFRFEVQSSYTVGSFKVKIKDSVGIRPDDQ 292
DYNIQ +S M IFVKT TGK EV+SS T+ + K KI+D GI D Q
Sbjct: 137 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIEDKEGIPTDQQ 196
Query: 293 -LIFGGRQLEDDRTFGYYNIQNESTLHLVNRLRGG 394
LIF G+QLED RT YNIQ ESTLHLV RLRGG
Sbjct: 197 RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 231
Score = 116 bits (290), Expect = 2e-24
Identities = 79/155 (50%), Positives = 92/155 (59%), Gaps = 24/155 (15%)
Frame = +2
Query: 2 QIFVKSLTERRIIPAVECCDKSSDTIDTV---------IKANRQRLTFAGQQLE----LT 142
QIF ++LTE+ I E SS TI+ V I ++QRL FAG+QLE L
Sbjct: 5 QIFARTLTEKTITLDAE----SSYTINNVKAQIQDKEGIPLDQQRLIFAGKQLEDGRTLA 60
Query: 143 DYNIQDKS----------AMVIFVKTSTGKLFRFEVQSSYTVGSFKVKIKDSVGIRPDDQ 292
DYNIQ +S M IFVKT TGK EV+SS T+ + K KI+D GI PD Q
Sbjct: 61 DYNIQKESILHLALRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILPDQQ 120
Query: 293 -LIFGGRQLEDDRTFGYYNIQNESTLHLVNRLRGG 394
LIF G+QLED RT YNIQ ESTLHLV RLRGG
Sbjct: 121 RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 155
Score = 112 bits (279), Expect = 4e-23
Identities = 78/155 (50%), Positives = 91/155 (58%), Gaps = 24/155 (15%)
Frame = +2
Query: 2 QIFVKSLTERRIIPAVECCDKSSDTIDTV---------IKANRQRLTFAGQQLE----LT 142
QIFVK+LT + I VE SSDTID + I ++QRL FAG+QLE L
Sbjct: 233 QIFVKTLTGKTITLEVE----SSDTIDNLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 288
Query: 143 DYNIQDKSA----------MVIFVKTSTGKLFRFEVQSSYTVGSFKVKIKDSVGIRPDDQ 292
DYNIQ +S M IFVKT TG+ EV+SS T+ + K KI+D I D Q
Sbjct: 289 DYNIQKESTLHLVLRLRGGMQIFVKTLTGRTITLEVESSDTIDNVKAKIQDKEEIPADQQ 348
Query: 293 -LIFGGRQLEDDRTFGYYNIQNESTLHLVNRLRGG 394
LIF G+QLED RT YNIQ ESTLHLV RL GG
Sbjct: 349 RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLCGG 383
>gb|AFK43392.1| unknown [Medicago truncatula]
Length = 233
Score = 125 bits (315), Expect = 3e-27
Identities = 84/156 (53%), Positives = 95/156 (60%), Gaps = 24/156 (15%)
Frame = +2
Query: 2 QIFVKSLTERRIIPAVECCDKSSDTIDTV---------IKANRQRLTFAGQQLE----LT 142
QIFVK+LT + I VE SSDTID V I ++QRL FAG+QLE L
Sbjct: 78 QIFVKTLTGKTITLEVE----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
Query: 143 DYNIQDKSA----------MVIFVKTSTGKLFRFEVQSSYTVGSFKVKIKDSVGIRPDDQ 292
DYNIQ +S M IFVKT TGK EV+SS T+ + K KI+D GI PD Q
Sbjct: 134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 193
Query: 293 -LIFGGRQLEDDRTFGYYNIQNESTLHLVNRLRGGG 397
LIF G+QLED RT YNIQ ESTLHLV RLRGGG
Sbjct: 194 RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229
Score = 122 bits (305), Expect = 4e-26
Identities = 82/155 (52%), Positives = 93/155 (60%), Gaps = 24/155 (15%)
Frame = +2
Query: 2 QIFVKSLTERRIIPAVECCDKSSDTIDTV---------IKANRQRLTFAGQQLE----LT 142
QIFVK+LT + I VE SSDTID I ++QRL FAG+QLE L
Sbjct: 2 QIFVKTLTGKTITLEVE----SSDTIDNAKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 57
Query: 143 DYNIQDKSA----------MVIFVKTSTGKLFRFEVQSSYTVGSFKVKIKDSVGIRPDDQ 292
DYNIQ +S M IFVKT TGK EV+SS T+ + K KI+D GI PD Q
Sbjct: 58 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 117
Query: 293 -LIFGGRQLEDDRTFGYYNIQNESTLHLVNRLRGG 394
LIF G+QLED RT YNIQ ESTLHLV RLRGG
Sbjct: 118 RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
Score = 89.7 bits (221), Expect = 2e-16
Identities = 49/76 (64%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Frame = +2
Query: 170 MVIFVKTSTGKLFRFEVQSSYTVGSFKVKIKDSVGIRPDDQ-LIFGGRQLEDDRTFGYYN 346
M IFVKT TGK EV+SS T+ + K KI+D GI PD Q LIF G+QLED RT YN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNAKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 347 IQNESTLHLVNRLRGG 394
IQ ESTLHLV RLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>gb|AFK41706.1| unknown [Medicago truncatula]
Length = 233
Score = 125 bits (315), Expect = 3e-27
Identities = 84/156 (53%), Positives = 95/156 (60%), Gaps = 24/156 (15%)
Frame = +2
Query: 2 QIFVKSLTERRIIPAVECCDKSSDTIDTV---------IKANRQRLTFAGQQLE----LT 142
QIFVK+LT + I VE SSDTID V I ++QRL FAG+QLE L
Sbjct: 78 QIFVKTLTGKTITLEVE----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
Query: 143 DYNIQDKSA----------MVIFVKTSTGKLFRFEVQSSYTVGSFKVKIKDSVGIRPDDQ 292
DYNIQ +S M IFVKT TGK EV+SS T+ + K KI+D GI PD Q
Sbjct: 134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 193
Query: 293 -LIFGGRQLEDDRTFGYYNIQNESTLHLVNRLRGGG 397
LIF G+QLED RT YNIQ ESTLHLV RLRGGG
Sbjct: 194 RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229
Score = 123 bits (309), Expect = 1e-26
Identities = 83/155 (53%), Positives = 94/155 (60%), Gaps = 24/155 (15%)
Frame = +2
Query: 2 QIFVKSLTERRIIPAVECCDKSSDTIDTV---------IKANRQRLTFAGQQLE----LT 142
QIFVK+LT + I VE SSDTID V I ++QRL FAG+QLE L
Sbjct: 2 QIFVKTLTGKTITLEVE----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 57
Query: 143 DYNIQDKSA----------MVIFVKTSTGKLFRFEVQSSYTVGSFKVKIKDSVGIRPDDQ 292
DYNIQ +S M IFVKT TGK EV+SS T+ + K KI+D GI PD Q
Sbjct: 58 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 117
Query: 293 -LIFGGRQLEDDRTFGYYNIQNESTLHLVNRLRGG 394
LIF G+QLED RT YNIQ ESTLHLV RLRGG
Sbjct: 118 RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
Score = 90.1 bits (222), Expect = 2e-16
Identities = 49/76 (64%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Frame = +2
Query: 170 MVIFVKTSTGKLFRFEVQSSYTVGSFKVKIKDSVGIRPDDQ-LIFGGRQLEDDRTFGYYN 346
M IFVKT TGK EV+SS T+ + K KI+D GI PD Q LIF G+QLED RT YN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 347 IQNESTLHLVNRLRGG 394
IQ ESTLHLV RLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>ref|XP_003607659.1| Ubiquitin [Medicago truncatula] gi|355508714|gb|AES89856.1|
Ubiquitin [Medicago truncatula]
Length = 259
Score = 125 bits (315), Expect = 3e-27
Identities = 84/155 (54%), Positives = 95/155 (61%), Gaps = 24/155 (15%)
Frame = +2
Query: 2 QIFVKSLTERRIIPAVECCDKSSDTIDTV---------IKANRQRLTFAGQQLE----LT 142
QIFVK+LT + I VE SSDTID V I ++QRL FAG+QLE L
Sbjct: 30 QIFVKTLTGKTITLEVE----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILA 85
Query: 143 DYNIQDKSA----------MVIFVKTSTGKLFRFEVQSSYTVGSFKVKIKDSVGIRPDDQ 292
DYNIQ +S M IFVKT TGK EV+SS T+ + K KI+D GI PD Q
Sbjct: 86 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 145
Query: 293 -LIFGGRQLEDDRTFGYYNIQNESTLHLVNRLRGG 394
LIF G+QLED RT G YNIQ ESTLHLV RLRGG
Sbjct: 146 RLIFAGKQLEDGRTLGDYNIQKESTLHLVLRLRGG 180
Score = 102 bits (254), Expect = 3e-20
Identities = 69/156 (44%), Positives = 91/156 (58%), Gaps = 24/156 (15%)
Frame = +2
Query: 2 QIFVKSLTERRIIPAVECCDKSSDTIDTV---------IKANRQRLTFAGQQLE----LT 142
QIFVK+LT + I VE SSDTID V I ++QRL FAG+QLE L
Sbjct: 106 QIFVKTLTGKTITLEVE----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLG 161
Query: 143 DYNIQDKSA----------MVIFVKTSTGKLFRFEVQSSYTVGSFKVKIKDSVGIRPDD- 289
DYNIQ +S M IFV T TGK +V+SS T+ K+ +++ VGI D
Sbjct: 162 DYNIQKESTLHLVLRLRGGMQIFVNTLTGKTITLDVESSDTIADVKLTLEEKVGIPLDQV 221
Query: 290 QLIFGGRQLEDDRTFGYYNIQNESTLHLVNRLRGGG 397
+++ G+QL+D T +YNIQ ESTLH+V ++ GGG
Sbjct: 222 RVVIAGKQLKDSYTLAHYNIQKESTLHMVLQVFGGG 257
Score = 87.8 bits (216), Expect = 8e-16
Identities = 48/76 (63%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Frame = +2
Query: 170 MVIFVKTSTGKLFRFEVQSSYTVGSFKVKIKDSVGIRPDDQ-LIFGGRQLEDDRTFGYYN 346
M IFVKT TGK EV+SS T+ + K KI+D GI PD Q LIF G+QLED R YN
Sbjct: 29 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYN 88
Query: 347 IQNESTLHLVNRLRGG 394
IQ ESTLHLV RLRGG
Sbjct: 89 IQKESTLHLVLRLRGG 104
>ref|XP_003590494.1| Ubiquitin [Medicago truncatula] gi|355479542|gb|AES60745.1|
Ubiquitin [Medicago truncatula]
Length = 312
Score = 125 bits (315), Expect = 3e-27
Identities = 84/156 (53%), Positives = 95/156 (60%), Gaps = 24/156 (15%)
Frame = +2
Query: 2 QIFVKSLTERRIIPAVECCDKSSDTIDTV---------IKANRQRLTFAGQQLE----LT 142
QIFVK+LT + I VE SSDTID V I ++QRL FAG+QLE L
Sbjct: 78 QIFVKTLTGKTITLEVE----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
Query: 143 DYNIQDKSA----------MVIFVKTSTGKLFRFEVQSSYTVGSFKVKIKDSVGIRPDDQ 292
DYNIQ +S M IFVKT TGK EV+SS T+ + K KI+D GI PD Q
Sbjct: 134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 193
Query: 293 -LIFGGRQLEDDRTFGYYNIQNESTLHLVNRLRGGG 397
LIF G+QLED RT YNIQ ESTLHLV RLRGGG
Sbjct: 194 RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229
Score = 123 bits (309), Expect = 1e-26
Identities = 83/155 (53%), Positives = 94/155 (60%), Gaps = 24/155 (15%)
Frame = +2
Query: 2 QIFVKSLTERRIIPAVECCDKSSDTIDTV---------IKANRQRLTFAGQQLE----LT 142
QIFVK+LT + I VE SSDTID V I ++QRL FAG+QLE L
Sbjct: 2 QIFVKTLTGKTITLEVE----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 57
Query: 143 DYNIQDKSA----------MVIFVKTSTGKLFRFEVQSSYTVGSFKVKIKDSVGIRPDDQ 292
DYNIQ +S M IFVKT TGK EV+SS T+ + K KI+D GI PD Q
Sbjct: 58 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 117
Query: 293 -LIFGGRQLEDDRTFGYYNIQNESTLHLVNRLRGG 394
LIF G+QLED RT YNIQ ESTLHLV RLRGG
Sbjct: 118 RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
Score = 90.1 bits (222), Expect = 2e-16
Identities = 49/76 (64%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Frame = +2
Query: 170 MVIFVKTSTGKLFRFEVQSSYTVGSFKVKIKDSVGIRPDDQ-LIFGGRQLEDDRTFGYYN 346
M IFVKT TGK EV+SS T+ + K KI+D GI PD Q LIF G+QLED RT YN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 347 IQNESTLHLVNRLRGG 394
IQ ESTLHLV RLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76