BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030744
         (390 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003531533.1| PREDICTED: pentatricopeptide repeat-containi...    67   2e-09
ref|XP_003545705.1| PREDICTED: pentatricopeptide repeat-containi...    65   4e-09
ref|XP_002522615.1| pentatricopeptide repeat-containing protein,...    65   4e-09
ref|NP_568214.1| pentatricopeptide repeat-containing protein [Ar...    62   4e-08
ref|XP_002871373.1| hypothetical protein ARALYDRAFT_487758 [Arab...    62   4e-08

>ref|XP_003531533.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
           mitochondrial-like [Glycine max]
          Length = 395

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 35/79 (44%), Positives = 54/79 (68%)
 Frame = -1

Query: 240 RINSHPALKLNQTRFLSNPFSSIPLESDDDLEESKQDDLKTKIFKLRFSKRSVTTLLEKW 61
           R NS  A  LN+TRF+S+   ++  +  ++  E   DDL+++IF+LR  KRS T +L+KW
Sbjct: 11  RRNSGLACLLNRTRFVSS--GAVSSDLVEESVEGVDDDLRSRIFRLRLPKRSATNVLQKW 68

Query: 60  VADGNNVTLLELRNIARDL 4
           V  GN VTL +LR+I+++L
Sbjct: 69  VLQGNPVTLSQLRDISKEL 87


>ref|XP_003545705.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
           mitochondrial-like [Glycine max]
          Length = 399

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 2/94 (2%)
 Frame = -1

Query: 279 RSLSSLLKRTLIERINSHPALKLNQTRFLSNPFSSIPLESDDDLEESKQ--DDLKTKIFK 106
           RSL   L+R    R NS  A  LN+TRF+S+        S D +EES +  DDL+++IF+
Sbjct: 4   RSLFLSLRRFSSCR-NSGLACVLNRTRFVSSG-----AVSSDLVEESVEGDDDLRSRIFR 57

Query: 105 LRFSKRSVTTLLEKWVADGNNVTLLELRNIARDL 4
           LR  KRS T +L+KWV  GN +TL +LR+I+++L
Sbjct: 58  LRLPKRSATNVLQKWVLQGNPITLSQLRDISKEL 91


>ref|XP_002522615.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538091|gb|EEF39702.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 426

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
 Frame = -1

Query: 312 LEADFVAATTMRSLSSLLKRTLIERINSHPALKLNQTRFLSNPF-SSIPLESDDDLEESK 136
           L+ + V    M S S L     I RINS      N  ++  N F SS  L ++   EES 
Sbjct: 9   LKTNEVKRAVMASRSFLFNLQRICRINSGIGSLSNSKKWEFNHFLSSGTLRNEVLAEESS 68

Query: 135 ----QDDLKTKIFKLRFSKRSVTTLLEKWVADGNNVTLLELRNIARDL 4
               +DDLK++IF+LR  KRS T ++  WV++GN VT  ELRNI+ +L
Sbjct: 69  SKEIEDDLKSRIFRLRLPKRSATNIIHNWVSEGNTVTASELRNISNEL 116


>ref|NP_568214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75165070|sp|Q94B59.1|PP372_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g09450, mitochondrial; Flags: Precursor
           gi|14596093|gb|AAK68774.1| putative protein [Arabidopsis
           thaliana] gi|27311913|gb|AAO00922.1| putative protein
           [Arabidopsis thaliana] gi|332004012|gb|AED91395.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 409

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 26/48 (54%), Positives = 39/48 (81%)
 Frame = -1

Query: 147 EESKQDDLKTKIFKLRFSKRSVTTLLEKWVADGNNVTLLELRNIARDL 4
           E  ++DDLK++IF+LR  KRS TT+LEKW+ +GN +T+ ELR I+++L
Sbjct: 50  ESEEKDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKEL 97


>ref|XP_002871373.1| hypothetical protein ARALYDRAFT_487758 [Arabidopsis lyrata subsp.
           lyrata] gi|297317210|gb|EFH47632.1| hypothetical protein
           ARALYDRAFT_487758 [Arabidopsis lyrata subsp. lyrata]
          Length = 410

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 26/48 (54%), Positives = 39/48 (81%)
 Frame = -1

Query: 147 EESKQDDLKTKIFKLRFSKRSVTTLLEKWVADGNNVTLLELRNIARDL 4
           E  ++DDLK++IF+LR  KRS TT+LE+WV +GN +T+ ELR I+++L
Sbjct: 51  ESEEKDDLKSRIFRLRLPKRSATTVLERWVGEGNQITINELREISKEL 98