BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030708
         (411 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containi...   196   1e-48
ref|XP_002306741.1| predicted protein [Populus trichocarpa] gi|2...   196   1e-48
ref|XP_003617444.1| Pentatricopeptide repeat-containing protein ...   175   4e-42
ref|XP_002534070.1| pentatricopeptide repeat-containing protein,...   173   1e-41
ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containi...   172   2e-41

>ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
           gi|302143555|emb|CBI22116.3| unnamed protein product
           [Vitis vinifera]
          Length = 533

 Score =  196 bits (499), Expect = 1e-48
 Identities = 93/135 (68%), Positives = 115/135 (85%)
 Frame = -2

Query: 410 SDLESSGLRPDDVSFIGVLTACNHSGMVNEAKYYLSLMTETYLIEPTIKHYGCMVDVLGR 231
           S LE S LRPDDV+F+GVLTACN+SG+V++AK Y SLM++TY IEP+IKHY CMVD LGR
Sbjct: 347 SRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGR 406

Query: 230 AGLLEEAEALITNMSIKPDAIIWGSLLSACRDHGNVEMGERAAKRLVELDPSDSGSYILL 51
           AGLLEEAE LI NM + PDAIIW SLLSACR HGNVE+ +RAAK +V+LD +DS  Y+LL
Sbjct: 407 AGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNVELAKRAAKHIVDLDGNDSCGYVLL 466

Query: 50  SNVFASSGRYEEAMD 6
           SN++A+S ++EEAM+
Sbjct: 467 SNIYAASDQFEEAME 481


>ref|XP_002306741.1| predicted protein [Populus trichocarpa] gi|222856190|gb|EEE93737.1|
           predicted protein [Populus trichocarpa]
          Length = 509

 Score =  196 bits (499), Expect = 1e-48
 Identities = 94/135 (69%), Positives = 116/135 (85%)
 Frame = -2

Query: 410 SDLESSGLRPDDVSFIGVLTACNHSGMVNEAKYYLSLMTETYLIEPTIKHYGCMVDVLGR 231
           S LESS L+PD VSFIGVLTACNH+GMV+ AK Y  LM+ETY IEP+IKHY CMVDVLGR
Sbjct: 319 SKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGR 378

Query: 230 AGLLEEAEALITNMSIKPDAIIWGSLLSACRDHGNVEMGERAAKRLVELDPSDSGSYILL 51
           AGLLEEAE LI +M + PDAIIWGSLLS+CR++GN+EM ++AAKR+ ELDP++S S+ILL
Sbjct: 379 AGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQAAKRVNELDPNESSSFILL 438

Query: 50  SNVFASSGRYEEAMD 6
           SNV+A+   +EEA++
Sbjct: 439 SNVYAAHNHFEEAIE 453


>ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355518779|gb|AET00403.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  175 bits (443), Expect = 4e-42
 Identities = 86/136 (63%), Positives = 108/136 (79%), Gaps = 1/136 (0%)
 Frame = -2

Query: 410 SDLESSGL-RPDDVSFIGVLTACNHSGMVNEAKYYLSLMTETYLIEPTIKHYGCMVDVLG 234
           S LESS L +PD VSFIGVLTAC H G +N+A+ Y  LM   Y IEP+IKHY C+VDVLG
Sbjct: 353 SKLESSKLLKPDSVSFIGVLTACKHLGAINKARDYFELMMNKYEIEPSIKHYTCIVDVLG 412

Query: 233 RAGLLEEAEALITNMSIKPDAIIWGSLLSACRDHGNVEMGERAAKRLVELDPSDSGSYIL 54
           +AGLLEEAE LI  M +KPDAIIWGSLLS+CR H NV++  RAA+R+ EL+PSD+  Y+L
Sbjct: 413 QAGLLEEAEELIKGMPLKPDAIIWGSLLSSCRKHRNVQIARRAAQRVYELNPSDASGYVL 472

Query: 53  LSNVFASSGRYEEAMD 6
           +SNV A+S ++EEA++
Sbjct: 473 MSNVHAASNKFEEAIE 488


>ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223525897|gb|EEF28314.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 533

 Score =  173 bits (439), Expect = 1e-41
 Identities = 82/134 (61%), Positives = 109/134 (81%)
 Frame = -2

Query: 410 SDLESSGLRPDDVSFIGVLTACNHSGMVNEAKYYLSLMTETYLIEPTIKHYGCMVDVLGR 231
           S L+SS LRPDDVSFI VLTAC+H+GMV++AK Y  LM + Y I+P IKH+ CMVDVLGR
Sbjct: 344 SVLQSSDLRPDDVSFIAVLTACDHTGMVDKAKDYFLLMRDKYKIKPGIKHFSCMVDVLGR 403

Query: 230 AGLLEEAEALITNMSIKPDAIIWGSLLSACRDHGNVEMGERAAKRLVELDPSDSGSYILL 51
           AGLLEEAE LI +M + PDAIIWGSLL +C  +GN++M +RAA  L+EL+PS+S S++L+
Sbjct: 404 AGLLEEAEELIRSMHVDPDAIIWGSLLWSCCKYGNIKMAKRAANHLIELNPSESSSFVLV 463

Query: 50  SNVFASSGRYEEAM 9
           +N +A++  +EEA+
Sbjct: 464 ANAYAAANNFEEAL 477


>ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Glycine max]
          Length = 534

 Score =  172 bits (437), Expect = 2e-41
 Identities = 85/135 (62%), Positives = 107/135 (79%)
 Frame = -2

Query: 410 SDLESSGLRPDDVSFIGVLTACNHSGMVNEAKYYLSLMTETYLIEPTIKHYGCMVDVLGR 231
           S LE+S L+PD VSFIGVLTAC + G V +A+ Y SLM   Y IEP+IKHY CMV+VLG+
Sbjct: 346 SKLEASDLKPDHVSFIGVLTACKYIGAVGKARDYFSLMMNKYEIEPSIKHYTCMVEVLGQ 405

Query: 230 AGLLEEAEALITNMSIKPDAIIWGSLLSACRDHGNVEMGERAAKRLVELDPSDSGSYILL 51
           A LLEEAE LI  M +K D IIWGSLLS+CR HGNVE+ +RAA+R+ EL+PSD+  Y+L+
Sbjct: 406 AALLEEAEQLIKGMPLKADFIIWGSLLSSCRKHGNVEIAKRAAQRVCELNPSDASGYLLM 465

Query: 50  SNVFASSGRYEEAMD 6
           SNV A+S ++EEAM+
Sbjct: 466 SNVQAASNQFEEAME 480