BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030691
         (334 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD96948.1| hypothetical protein [Cleome spinosa]                   91   1e-19
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...    90   7e-18
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...    89   1e-17
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]        86   8e-17
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...    82   1e-16

>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
          Length = 539

 Score = 90.5 bits (223), Expect(2) = 1e-19
 Identities = 39/89 (43%), Positives = 58/89 (65%)
 Frame = +1

Query: 1   DTVSWSSISYMLDAYCFPPKFKSWLTSCFSTPFFSIIVNDGPHGYFQGKRGLRKGDPLSP 180
           DTVSW  I+ ++ A   P  F +W+  C  TP FS+ +N    GYF+G+RGLR+GDPLSP
Sbjct: 52  DTVSWEFITKIMQALNLPRTFVTWVKVCMETPKFSVSINGELAGYFKGRRGLRQGDPLSP 111

Query: 181 YIFVIIIEILNSLLVQSFLSKTIMAHPKC 267
           Y+F++ +E+L+ +L +      +  HPKC
Sbjct: 112 YLFIMSMEVLSRMLDRCAAESRLSLHPKC 140



 Score = 30.8 bits (68), Expect(2) = 1e-19
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 270 SSKITHLCFADDVLLFTKG 326
           S  ITHL FADD+++FT G
Sbjct: 142 SPVITHLAFADDIMIFTSG 160


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 893

 Score = 89.7 bits (221), Expect(2) = 7e-18
 Identities = 40/88 (45%), Positives = 55/88 (62%)
 Frame = +1

Query: 1   DTVSWSSISYMLDAYCFPPKFKSWLTSCFSTPFFSIIVNDGPHGYFQGKRGLRKGDPLSP 180
           D+V W  I     A   P KF  W+  C STP+FS++VN    G+F+  +GLR+GDPLSP
Sbjct: 600 DSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSP 659

Query: 181 YIFVIIIEILNSLLVQSFLSKTIMAHPK 264
           Y+FV+ +E+ +SLL   F +  I  HPK
Sbjct: 660 YLFVLAMEVFSSLLKARFDAGYIQYHPK 687



 Score = 25.4 bits (54), Expect(2) = 7e-18
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 279 ITHLCFADDVLLFTKG 326
           I+HL FADDV++F  G
Sbjct: 693 ISHLMFADDVMVFFDG 708


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 893

 Score = 89.0 bits (219), Expect(2) = 1e-17
 Identities = 40/88 (45%), Positives = 55/88 (62%)
 Frame = +1

Query: 1   DTVSWSSISYMLDAYCFPPKFKSWLTSCFSTPFFSIIVNDGPHGYFQGKRGLRKGDPLSP 180
           D+V W  I     A   P KF  W+  C STP+FS++VN    G+F+  +GLR+GDPLSP
Sbjct: 600 DSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSP 659

Query: 181 YIFVIIIEILNSLLVQSFLSKTIMAHPK 264
           Y+FV+ +E+ +SLL   F +  I  HPK
Sbjct: 660 YLFVLAMEVFSSLLKARFDAGYIHYHPK 687



 Score = 25.4 bits (54), Expect(2) = 1e-17
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 279 ITHLCFADDVLLFTKG 326
           I+HL FADDV++F  G
Sbjct: 693 ISHLMFADDVMVFFDG 708


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score = 85.9 bits (211), Expect(2) = 8e-17
 Identities = 38/88 (43%), Positives = 56/88 (63%)
 Frame = +1

Query: 1   DTVSWSSISYMLDAYCFPPKFKSWLTSCFSTPFFSIIVNDGPHGYFQGKRGLRKGDPLSP 180
           D+V W  +   L A   P KF +W++ C STP F++ +N G  G+F+  +GLR+GDPLSP
Sbjct: 599 DSVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSP 658

Query: 181 YIFVIIIEILNSLLVQSFLSKTIMAHPK 264
           Y+FV+ +E  ++LL   + S  I  HPK
Sbjct: 659 YLFVLAMEAFSNLLHSRYESGLIHYHPK 686



 Score = 25.8 bits (55), Expect(2) = 8e-17
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 279 ITHLCFADDVLLFTKG 326
           I+HL FADDV++F  G
Sbjct: 692 ISHLMFADDVMIFFDG 707


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score = 82.0 bits (201), Expect(2) = 1e-16
 Identities = 38/89 (42%), Positives = 55/89 (61%)
 Frame = +1

Query: 1    DTVSWSSISYMLDAYCFPPKFKSWLTSCFSTPFFSIIVNDGPHGYFQGKRGLRKGDPLSP 180
            D+V W  +   L+A  FP KF+ W+  C ST  FS+ VN    G+F  KRGLR+G  LSP
Sbjct: 747  DSVQWQFLLNTLEALKFPEKFRHWIKLCISTATFSVQVNSEQAGFFGSKRGLRQGCALSP 806

Query: 181  YIFVIIIEILNSLLVQSFLSKTIMAHPKC 267
            Y+FVI + +L+ ++  + + + I  HPKC
Sbjct: 807  YLFVICMNVLSHMIDVAAVHRNIGYHPKC 835



 Score = 29.3 bits (64), Expect(2) = 1e-16
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 279 ITHLCFADDVLLFTKG 326
           +THLCFADD+++F  G
Sbjct: 840 LTHLCFADDLMVFIDG 855