BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030684
         (242 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271842.1| PREDICTED: uncharacterized protein LOC100252...    88   6e-16
ref|XP_002871294.1| mitochondrial transcription termination fact...    88   8e-16
ref|XP_002271767.1| PREDICTED: uncharacterized protein LOC100251...    88   8e-16
emb|CAN70295.1| hypothetical protein VITISV_035778 [Vitis vinifera]    88   8e-16
ref|NP_568185.1| Mitochondrial transcription termination factor ...    87   1e-15

>ref|XP_002271842.1| PREDICTED: uncharacterized protein LOC100252260 [Vitis vinifera]
          Length = 365

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 37/79 (46%), Positives = 54/79 (68%)
 Frame = -2

Query: 238 WDTKLEAYKSFGWSEDEVLSMFKKHPSVMAISVKKINLVLDFFMNTLNWTPDDFSRYPRA 59
           W++K+  ++SFGW E+E +++F K P  M+ S  +I   LDF +N LNW P+D  +YP  
Sbjct: 237 WESKVSVFRSFGWGEEEFIALFVKQPQFMSNSETRIRKCLDFLINELNWMPEDIFKYPMV 296

Query: 58  ISYSLEKRVIPRCYVLQIL 2
           +  SLEKRV+PR  VLQ+L
Sbjct: 297 LLLSLEKRVVPRSRVLQLL 315


>ref|XP_002871294.1| mitochondrial transcription termination factor family protein
           [Arabidopsis lyrata subsp. lyrata]
           gi|297317131|gb|EFH47553.1| mitochondrial transcription
           termination factor family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 404

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 36/80 (45%), Positives = 54/80 (67%)
 Frame = -2

Query: 241 LWDTKLEAYKSFGWSEDEVLSMFKKHPSVMAISVKKINLVLDFFMNTLNWTPDDFSRYPR 62
           +WD   E Y+ +GWSED+++  FKKHP  M +S +KIN  ++FF+N +N  P   +  P 
Sbjct: 277 IWDKCFEVYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTMEFFVNEMNLAPRSIAECPV 336

Query: 61  AISYSLEKRVIPRCYVLQIL 2
            + +SLEKR+IPRC V ++L
Sbjct: 337 VLFFSLEKRIIPRCSVTKVL 356


>ref|XP_002271767.1| PREDICTED: uncharacterized protein LOC100251440 [Vitis vinifera]
          Length = 478

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 38/76 (50%), Positives = 54/76 (71%)
 Frame = -2

Query: 229 KLEAYKSFGWSEDEVLSMFKKHPSVMAISVKKINLVLDFFMNTLNWTPDDFSRYPRAISY 50
           K+E Y+ +GWSEDE+LS F++ P  M +S KK+N VLDF +N + W P   +R P AI  
Sbjct: 324 KMEMYRRWGWSEDEILSAFRRRPQCMQLSEKKVNKVLDFLVNKMGWQPAVVARAPVAICL 383

Query: 49  SLEKRVIPRCYVLQIL 2
           + EKRV+PRC V+++L
Sbjct: 384 NFEKRVVPRCSVVKVL 399


>emb|CAN70295.1| hypothetical protein VITISV_035778 [Vitis vinifera]
          Length = 157

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 38/76 (50%), Positives = 54/76 (71%)
 Frame = -2

Query: 229 KLEAYKSFGWSEDEVLSMFKKHPSVMAISVKKINLVLDFFMNTLNWTPDDFSRYPRAISY 50
           K+E Y+ +GWSEDE+LS F++ P  M +S KK+N VLDF +N + W P   +R P AI  
Sbjct: 28  KMEMYRRWGWSEDEILSAFRRRPQCMQLSEKKVNKVLDFLVNKMGWQPAVVARAPVAICL 87

Query: 49  SLEKRVIPRCYVLQIL 2
           + EKRV+PRC V+++L
Sbjct: 88  NFEKRVVPRCSVVKVL 103


>ref|NP_568185.1| Mitochondrial transcription termination factor family protein
           [Arabidopsis thaliana]
           gi|13878065|gb|AAK44110.1|AF370295_1 unknown protein
           [Arabidopsis thaliana] gi|6562304|emb|CAB62602.1|
           putative protein [Arabidopsis thaliana]
           gi|10176724|dbj|BAB09954.1| unnamed protein product
           [Arabidopsis thaliana] gi|17104655|gb|AAL34216.1|
           unknown protein [Arabidopsis thaliana]
           gi|21592327|gb|AAM64278.1| unknown [Arabidopsis
           thaliana] gi|332003836|gb|AED91219.1| Mitochondrial
           transcription termination factor family protein
           [Arabidopsis thaliana]
          Length = 405

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 35/80 (43%), Positives = 55/80 (68%)
 Frame = -2

Query: 241 LWDTKLEAYKSFGWSEDEVLSMFKKHPSVMAISVKKINLVLDFFMNTLNWTPDDFSRYPR 62
           +WD   E Y+ +GWSED+++  FKKHP  M +S +KIN  +++F+N +N  P   ++ P 
Sbjct: 278 IWDKCFEVYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTMEYFVNEMNMAPRSIAQCPV 337

Query: 61  AISYSLEKRVIPRCYVLQIL 2
            + +SLEKR+IPRC V ++L
Sbjct: 338 VLFFSLEKRIIPRCSVTKVL 357