BLASTX nr result

ID: Coptis23_contig00030576 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030576
         (243 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN72487.1| hypothetical protein VITISV_020885 [Vitis vinifera]    59   5e-07
emb|CBI24996.3| unnamed protein product [Vitis vinifera]               55   5e-06
ref|XP_002263752.1| PREDICTED: uncharacterized protein At5g39865...    55   5e-06

>emb|CAN72487.1| hypothetical protein VITISV_020885 [Vitis vinifera]
          Length = 376

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 5/59 (8%)
 Frame = +3

Query: 15  CSPSSFHRVD-----STSLKDNSEIVGVDVSSFRRPDLSAGSLFDPNLLAAFDKARMEQ 176
           CS   F R D     +T    ++ +  +D+SSFRRPDL++GSLFDPNLLAAF +A M+Q
Sbjct: 121 CSEPGFQRKDDGTWEATGNPGHTPLSEIDISSFRRPDLNSGSLFDPNLLAAFQQAVMDQ 179


>emb|CBI24996.3| unnamed protein product [Vitis vinifera]
          Length = 399

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 25/45 (55%), Positives = 36/45 (80%)
 Frame = +3

Query: 42  DSTSLKDNSEIVGVDVSSFRRPDLSAGSLFDPNLLAAFDKARMEQ 176
           ++T    ++ +  +D+SSFRRPDL++GSLFDPNLLAAF +A M+Q
Sbjct: 158 EATGNPGHTPLSEIDISSFRRPDLNSGSLFDPNLLAAFQQAVMDQ 202


>ref|XP_002263752.1| PREDICTED: uncharacterized protein At5g39865-like [Vitis vinifera]
          Length = 376

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 25/45 (55%), Positives = 36/45 (80%)
 Frame = +3

Query: 42  DSTSLKDNSEIVGVDVSSFRRPDLSAGSLFDPNLLAAFDKARMEQ 176
           ++T    ++ +  +D+SSFRRPDL++GSLFDPNLLAAF +A M+Q
Sbjct: 135 EATGNPGHTPLSEIDISSFRRPDLNSGSLFDPNLLAAFQQAVMDQ 179


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