BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030568
         (330 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511627.1| pentatricopeptide repeat-containing protein,...    46   4e-09
ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containi...    43   1e-06
ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    43   1e-06

>ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548807|gb|EEF50296.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1163

 Score = 45.8 bits (107), Expect(2) = 4e-09
 Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
 Frame = +3

Query: 78  LICNVPQKEEVERALELFDELLQNETIV*DEGCVPYA*A-------LV*KEKTKKAERVF 236
           LI N+ Q+   ERA +LFDEL + E ++ D+GC P   A       L    KT KAERVF
Sbjct: 411 LIRNLCQRGNFERAEQLFDELSEKEILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAERVF 470

Query: 237 KQ 242
           +Q
Sbjct: 471 RQ 472



 Score = 39.7 bits (91), Expect(2) = 4e-09
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +2

Query: 242 VLKKGRQDPPAFRTVIPGHCKRRTFEADY 328
           ++K+G QDP +F+ +I GHC+  TFEA Y
Sbjct: 473 LMKRGTQDPLSFKILIKGHCREGTFEAGY 501


>ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Cucumis sativus]
          Length = 757

 Score = 43.1 bits (100), Expect(2) = 1e-06
 Identities = 15/29 (51%), Positives = 24/29 (82%)
 Frame = +2

Query: 242 VLKKGRQDPPAFRTVIPGHCKRRTFEADY 328
           ++++G QDPP+++T+I GHCK  TFE+ Y
Sbjct: 466 LMRRGTQDPPSYKTLIMGHCKEGTFESGY 494



 Score = 34.3 bits (77), Expect(2) = 1e-06
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
 Frame = +3

Query: 78  LICNVPQKEEVERALELFDELLQNETIV*DEGCVPYA*A-------LV*KEKTKKAERVF 236
           L+ ++ Q    E+A +L D+LL+ + ++  +GC P   A       L    KTKKAE+ F
Sbjct: 404 LVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAF 463

Query: 237 KQY*RK 254
           +Q  R+
Sbjct: 464 RQLMRR 469


>ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02060, chloroplastic-like [Cucumis sativus]
          Length = 720

 Score = 43.1 bits (100), Expect(2) = 1e-06
 Identities = 15/29 (51%), Positives = 24/29 (82%)
 Frame = +2

Query: 242 VLKKGRQDPPAFRTVIPGHCKRRTFEADY 328
           ++++G QDPP+++T+I GHCK  TFE+ Y
Sbjct: 466 LMRRGTQDPPSYKTLIMGHCKEGTFESGY 494



 Score = 34.3 bits (77), Expect(2) = 1e-06
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
 Frame = +3

Query: 78  LICNVPQKEEVERALELFDELLQNETIV*DEGCVPYA*A-------LV*KEKTKKAERVF 236
           L+ ++ Q    E+A +L D+LL+ + ++  +GC P   A       L    KTKKAE+ F
Sbjct: 404 LVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAF 463

Query: 237 KQY*RK 254
           +Q  R+
Sbjct: 464 RQLMRR 469