BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030508
         (972 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002322376.1| predicted protein [Populus trichocarpa] gi|2...   240   4e-61
ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containi...   234   2e-59
emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]   234   2e-59
ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containi...   224   2e-56
ref|XP_002528370.1| pentatricopeptide repeat-containing protein,...   224   2e-56

>ref|XP_002322376.1| predicted protein [Populus trichocarpa] gi|222869372|gb|EEF06503.1|
            predicted protein [Populus trichocarpa]
          Length = 715

 Score =  240 bits (612), Expect = 4e-61
 Identities = 112/160 (70%), Positives = 138/160 (86%)
 Frame = -1

Query: 972  CGYCKDRNADAALKVFEKMGEHGCLADSVTYGALISGLCKESQLEKARKLYDSMINKGCS 793
            CGYC+DRN   ALK F +M +HGC  DS+TYGALISGLCKES+L++A +LY++M++KG S
Sbjct: 555  CGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKESKLDEACQLYEAMVDKGLS 614

Query: 792  PCEVTRLTLAYEYCSKDDSITAIAILDRLEKKHWIRTVNTLVRKLCSDGKVEIASLFFNK 613
            PCEVTRLTLAYEYC +DDS TA+ IL+RL+KK WIRTVNTL+RKLCS+ KV +A LFF+K
Sbjct: 615  PCEVTRLTLAYEYCKQDDSATAMVILERLDKKLWIRTVNTLIRKLCSERKVGMAVLFFHK 674

Query: 612  LLDKDPNVDHVTFTAFTTACYDSHKYSVASNLSGRISEGI 493
            LLDKD NVD VT TAFTTACY+S+KY++ S+LS RIS+GI
Sbjct: 675  LLDKDQNVDRVTLTAFTTACYESNKYALVSDLSERISKGI 714


>ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19890-like
            [Vitis vinifera]
          Length = 708

 Score =  234 bits (597), Expect = 2e-59
 Identities = 108/160 (67%), Positives = 132/160 (82%)
 Frame = -1

Query: 972  CGYCKDRNADAALKVFEKMGEHGCLADSVTYGALISGLCKESQLEKARKLYDSMINKGCS 793
            CGYC+  N   A+K+F++M  HGC  DS+TYGALISGLCKES+L+ AR LYD+M++KG S
Sbjct: 548  CGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLS 607

Query: 792  PCEVTRLTLAYEYCSKDDSITAIAILDRLEKKHWIRTVNTLVRKLCSDGKVEIASLFFNK 613
            PCEVTRLTLAYEYC KDDS TAI +LDRLEK+ WIRTVNTLVRKLCS+GK+++A+LFF+K
Sbjct: 608  PCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAALFFHK 667

Query: 612  LLDKDPNVDHVTFTAFTTACYDSHKYSVASNLSGRISEGI 493
            LLDK+PNV+ VT   F   CY+S+KY + S LS RI EGI
Sbjct: 668  LLDKEPNVNRVTLLGFMNKCYESNKYGLVSELSERICEGI 707


>emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  234 bits (597), Expect = 2e-59
 Identities = 108/160 (67%), Positives = 132/160 (82%)
 Frame = -1

Query: 972  CGYCKDRNADAALKVFEKMGEHGCLADSVTYGALISGLCKESQLEKARKLYDSMINKGCS 793
            CGYC+  N   A+K+F++M  HGC  DS+TYGALISGLCKES+L+ AR LYD+M++KG S
Sbjct: 548  CGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLS 607

Query: 792  PCEVTRLTLAYEYCSKDDSITAIAILDRLEKKHWIRTVNTLVRKLCSDGKVEIASLFFNK 613
            PCEVTRLTLAYEYC KDDS TAI +LDRLEK+ WIRTVNTLVRKLCS+GK+++A+LFF+K
Sbjct: 608  PCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAALFFHK 667

Query: 612  LLDKDPNVDHVTFTAFTTACYDSHKYSVASNLSGRISEGI 493
            LLDK+PNV+ VT   F   CY+S+KY + S LS RI EGI
Sbjct: 668  LLDKEPNVNRVTLLGFMNKCYESNKYGLVSELSERICEGI 707


>ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  224 bits (572), Expect = 2e-56
 Identities = 103/156 (66%), Positives = 130/156 (83%)
 Frame = -1

Query: 972 CGYCKDRNADAALKVFEKMGEHGCLADSVTYGALISGLCKESQLEKARKLYDSMINKGCS 793
           CGYC++ N   ALK F +M +HGC +DS+TYGALISGLCK+S+L++AR LYD+MI KG +
Sbjct: 526 CGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLT 585

Query: 792 PCEVTRLTLAYEYCSKDDSITAIAILDRLEKKHWIRTVNTLVRKLCSDGKVEIASLFFNK 613
           PCEVTR+TLAYEYC  DD  +A+ +L+RLEKK W+RTVNTLVRKLCS+ KV +A+LFF+K
Sbjct: 586 PCEVTRVTLAYEYCKIDDGCSAMVVLERLEKKLWVRTVNTLVRKLCSERKVGMAALFFHK 645

Query: 612 LLDKDPNVDHVTFTAFTTACYDSHKYSVASNLSGRI 505
           LLDKDPNV+ VT  AF TACY+S+KY + S+LS RI
Sbjct: 646 LLDKDPNVNRVTIAAFMTACYESNKYDLVSDLSARI 681



 Score = 61.6 bits (148), Expect = 3e-07
 Identities = 44/194 (22%), Positives = 92/194 (47%), Gaps = 9/194 (4%)
 Frame = -1

Query: 969 GYCKDRNADAALKVFEKMGEHGCLADSVTYGALISGLCKESQLEKARKLYDSMINKGCSP 790
           G+CK  N + A ++   M E G   +  TY A++ GLCK+ ++++A K+  S    G   
Sbjct: 387 GHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDA 446

Query: 789 CEVTRLTLAYEYCSKDDSITAIAILDRLEK---KHWIRTVNTLVRKLCSDGKVEIASLFF 619
            +VT   L  E+C + +   A+ + +++ K   +  I +  TL+   C + +++ + +FF
Sbjct: 447 DKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFF 506

Query: 618 NKLLDKDPNVDHVTFTAFTTA-CYDSH-----KYSVASNLSGRISEGIT*QQPLFPMCE* 457
            + +       + T+T+     C + +     K+    +  G  S+ IT    +  +C+ 
Sbjct: 507 EEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQ 566

Query: 456 DEFSGARRIHELYI 415
            +   AR +++  I
Sbjct: 567 SKLDEARCLYDAMI 580


>ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223532238|gb|EEF34042.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 712

 Score =  224 bits (571), Expect = 2e-56
 Identities = 104/160 (65%), Positives = 135/160 (84%)
 Frame = -1

Query: 972  CGYCKDRNADAALKVFEKMGEHGCLADSVTYGALISGLCKESQLEKARKLYDSMINKGCS 793
            CGYC+D +  +A+K F KM ++GC  DS+TYGALISGLC ES+L++A +LY++MI+ G S
Sbjct: 552  CGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNGLS 611

Query: 792  PCEVTRLTLAYEYCSKDDSITAIAILDRLEKKHWIRTVNTLVRKLCSDGKVEIASLFFNK 613
            PCEVTR+TLAYEYC + DS TA+ IL+RLEKK WIRTVNTL+RKLCS+ KV +A+LFF+K
Sbjct: 612  PCEVTRVTLAYEYCKQGDSATAMIILERLEKKLWIRTVNTLIRKLCSEKKVGVAALFFHK 671

Query: 612  LLDKDPNVDHVTFTAFTTACYDSHKYSVASNLSGRISEGI 493
            LLDKD NVD +T  AFTTACY+S+K+++ S+LS RIS+GI
Sbjct: 672  LLDKDLNVDRITLAAFTTACYESNKFALVSDLSERISKGI 711



 Score = 68.2 bits (165), Expect = 3e-09
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 4/147 (2%)
 Frame = -1

Query: 969 GYCKDRNADAALKVFEKMGEHGCLADSVTYGALISGLCKESQLEKARKLYDSMINKGCSP 790
           G+CK  N   A ++ + MG+ G   +  TY A+I GLCK+ +  +A KL    +  G   
Sbjct: 413 GHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHA 472

Query: 789 CEVTRLTLAYEYCSKDDSITAIAILDRLEK---KHWIRTVNTLVRKLCSDGKVEIASLFF 619
            +VT   L  E+C + D+  A+AI  R+ K   +  + T N L+   C   KVE +   F
Sbjct: 473 DKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLF 532

Query: 618 NKLLDKDPNVDHVTFTAFTTA-CYDSH 541
            + +         T+T+     C D H
Sbjct: 533 EEAVGLGLLPTKETYTSMICGYCRDGH 559



 Score = 57.0 bits (136), Expect = 7e-06
 Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 3/133 (2%)
 Frame = -1

Query: 966 YCKDRNADAALKVFEKMGEHGCLADSVTYGALISGLCKESQLEKARKLYDSMINKGCSPC 787
           +C+  +   AL +F +M + G   D  TY  LI+  C++ ++E++ KL++  +  G  P 
Sbjct: 484 FCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPT 543

Query: 786 EVTRLTLAYEYCSKDDSITAIAILDRLEK---KHWIRTVNTLVRKLCSDGKVEIASLFFN 616
           + T  ++   YC      +AI    ++     K    T   L+  LC++ K++ A   + 
Sbjct: 544 KETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYE 603

Query: 615 KLLDKDPNVDHVT 577
            ++D   +   VT
Sbjct: 604 TMIDNGLSPCEVT 616