BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030500
         (305 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCH50966.1| T4.5 [Malus x robusta]                                 72   5e-11
gb|ADN33871.1| retrotransposon protein [Cucumis melo subsp. melo]      59   4e-07

>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 11/109 (10%)
 Frame = +3

Query: 6   STIAEFLQKLKFLVDSLAAPRAPVSKGDLIFHTLRGLPEEYGPFATSIRTWSPNEPIQVD 185
           S++ +FL  +K + + LAA   P+S+ DL+ + L GLP+EY  F  SI T   NE +  D
Sbjct: 393 SSMTDFLNSIKEISNKLAAAGEPLSESDLVAYILSGLPDEYESFVDSIET--RNESVTAD 450

Query: 186 ELHGLILSKELAIQELRGNTHAD---PVQAFAA--------FNNNRGRG 299
           ELHGL+LSKE+++Q+ +    +    P  A+AA        FN    RG
Sbjct: 451 ELHGLLLSKEISLQKRKTRASSSSNAPFHAYAAQSSTHVGHFNKGNSRG 499


>gb|ADN33871.1| retrotransposon protein [Cucumis melo subsp. melo]
          Length = 136

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
 Frame = +3

Query: 9   TIAEFLQKLKFLVDSLAAPRAPVSKGDLIFHTLRGLPEEYGPFATSIRTWSPNEPIQVDE 188
           +I ++  ++K LVD LA     +   +++ HTL GLP  +  F TSIRT S N  I ++E
Sbjct: 9   SIDQYTSRIKALVDKLAVASVSLEDEEILVHTLNGLPAAFNTFHTSIRTRSGN--ISLEE 66

Query: 189 LHGLILSKELAIQELRGNTHADPVQAFAAF-----NNNRGRG 299
           LH L++S+E  + +      A P  A AAF     ++NRGRG
Sbjct: 67  LHTLLISEETTMAKTPA-IEAIPT-AMAAFHPTQHHDNRGRG 106