BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030492
         (353 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36837.3| unnamed protein product [Vitis vinifera]              184   7e-45
ref|XP_002267393.1| PREDICTED: mismatch repair endonuclease PMS2...   184   7e-45
ref|XP_002523056.1| DNA mismatch repair protein pms2, putative [...   178   5e-43
ref|XP_002321013.1| predicted protein [Populus trichocarpa] gi|2...   173   1e-41
emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]   172   3e-41

>emb|CBI36837.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score =  184 bits (467), Expect = 7e-45
 Identities = 89/117 (76%), Positives = 105/117 (89%)
 Frame = -1

Query: 353  ADEKHNFERLSQSTILNQQPLLQSLRLELSPEEEIVAMMHMDMDIIRKNGFTLVDELDAP 174
            ADEK+NFE L+QST+LNQQPLL+ LRL+LSPEEE++A +HMD  IIRKNGF L ++L AP
Sbjct: 662  ADEKYNFEHLAQSTVLNQQPLLRPLRLDLSPEEEVIASIHMD--IIRKNGFALEEDLHAP 719

Query: 173  PGQRFKLKAVPFSKNITFGAEDVKELISTLSDSQGECTMMSSYKMDSLDSICPSRVR 3
            PGQRFKLKAVPFSKNITFG EDVKELISTL+D QGEC+++ +YKMD+ DSICPSRVR
Sbjct: 720  PGQRFKLKAVPFSKNITFGVEDVKELISTLADGQGECSILGTYKMDTCDSICPSRVR 776


>ref|XP_002267393.1| PREDICTED: mismatch repair endonuclease PMS2-like [Vitis vinifera]
          Length = 937

 Score =  184 bits (467), Expect = 7e-45
 Identities = 89/117 (76%), Positives = 105/117 (89%)
 Frame = -1

Query: 353  ADEKHNFERLSQSTILNQQPLLQSLRLELSPEEEIVAMMHMDMDIIRKNGFTLVDELDAP 174
            ADEK+NFE L+QST+LNQQPLL+ LRL+LSPEEE++A +HMD  IIRKNGF L ++L AP
Sbjct: 745  ADEKYNFEHLAQSTVLNQQPLLRPLRLDLSPEEEVIASIHMD--IIRKNGFALEEDLHAP 802

Query: 173  PGQRFKLKAVPFSKNITFGAEDVKELISTLSDSQGECTMMSSYKMDSLDSICPSRVR 3
            PGQRFKLKAVPFSKNITFG EDVKELISTL+D QGEC+++ +YKMD+ DSICPSRVR
Sbjct: 803  PGQRFKLKAVPFSKNITFGVEDVKELISTLADGQGECSILGTYKMDTCDSICPSRVR 859


>ref|XP_002523056.1| DNA mismatch repair protein pms2, putative [Ricinus communis]
            gi|223537618|gb|EEF39241.1| DNA mismatch repair protein
            pms2, putative [Ricinus communis]
          Length = 924

 Score =  178 bits (451), Expect = 5e-43
 Identities = 88/117 (75%), Positives = 103/117 (88%)
 Frame = -1

Query: 353  ADEKHNFERLSQSTILNQQPLLQSLRLELSPEEEIVAMMHMDMDIIRKNGFTLVDELDAP 174
            ADEK+NFE L QSTILNQQPLL+SLRLELSPEEE+VA M+M++  IRKNGF L ++  AP
Sbjct: 744  ADEKYNFEHLCQSTILNQQPLLRSLRLELSPEEEVVASMNMEL--IRKNGFALEEDPHAP 801

Query: 173  PGQRFKLKAVPFSKNITFGAEDVKELISTLSDSQGECTMMSSYKMDSLDSICPSRVR 3
            PG RFKLKAVPFSKNITFG EDVK+LISTL+DSQG+C+++ SYKMD  DS+CPSRVR
Sbjct: 802  PGHRFKLKAVPFSKNITFGVEDVKDLISTLADSQGDCSIIGSYKMDKSDSVCPSRVR 858


>ref|XP_002321013.1| predicted protein [Populus trichocarpa] gi|222861786|gb|EEE99328.1|
            predicted protein [Populus trichocarpa]
          Length = 915

 Score =  173 bits (438), Expect = 1e-41
 Identities = 87/116 (75%), Positives = 101/116 (87%)
 Frame = -1

Query: 353  ADEKHNFERLSQSTILNQQPLLQSLRLELSPEEEIVAMMHMDMDIIRKNGFTLVDELDAP 174
            ADEK+NFERL QSTILNQQPLL+ LRLELSPEEE+VA M++D  IIRKNGF L ++  A 
Sbjct: 735  ADEKYNFERLCQSTILNQQPLLRPLRLELSPEEEVVASMNLD--IIRKNGFALEEDPHAL 792

Query: 173  PGQRFKLKAVPFSKNITFGAEDVKELISTLSDSQGECTMMSSYKMDSLDSICPSRV 6
            PG  FKLKAVPFSKNITFG EDVK+LISTL+DSQGEC+++S YKMD+ DS+CPSRV
Sbjct: 793  PGHHFKLKAVPFSKNITFGVEDVKDLISTLADSQGECSIISRYKMDTADSVCPSRV 848


>emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]
          Length = 3804

 Score =  172 bits (435), Expect = 3e-41
 Identities = 89/139 (64%), Positives = 105/139 (75%), Gaps = 22/139 (15%)
 Frame = -1

Query: 353  ADEKHNFERLSQSTILNQQPLLQ----------------------SLRLELSPEEEIVAM 240
            ADEK+NFE L+QST+LNQQPLL+                       LRL+LSPEEE++A 
Sbjct: 3462 ADEKYNFEHLAQSTVLNQQPLLRYGVQNIHEVTSIELLCVSYTIGPLRLDLSPEEEVIAF 3521

Query: 239  MHMDMDIIRKNGFTLVDELDAPPGQRFKLKAVPFSKNITFGAEDVKELISTLSDSQGECT 60
            +HMD  IIRKNGF L ++L APPGQRFKLKAVPFSKNITFG EDVKELISTL+D QGEC+
Sbjct: 3522 IHMD--IIRKNGFALEEDLHAPPGQRFKLKAVPFSKNITFGVEDVKELISTLADGQGECS 3579

Query: 59   MMSSYKMDSLDSICPSRVR 3
            ++ +YKMD+ DSICPSRVR
Sbjct: 3580 ILGTYKMDTCDSICPSRVR 3598