BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030486
         (950 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...    91   5e-37
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...    93   1e-34
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga...    82   9e-34
gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptas...    98   7e-33
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...    90   1e-31

>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 90.5 bits (223), Expect(4) = 5e-37
 Identities = 40/89 (44%), Positives = 62/89 (69%)
 Frame = +1

Query: 55  LRQGDPLSPILFILCMEVLSRIMQQKIEENKMHGISISKNSSPISHLLFVDDAFIYCRAN 234
           LRQGDPLSP LFI+  +  S+++Q+K+++ ++HG   S++   ISHL F DD+ ++ RAN
Sbjct: 637 LRQGDPLSPYLFIMVADAFSKMIQRKVQDKQLHGAKASRSGPEISHLFFADDSLLFTRAN 696

Query: 235 LDETRALLDALNSFCSITGQEINFEKSGV 321
             E   ++D LN +   +GQ+IN+EKS V
Sbjct: 697 RQECTIIVDILNQYELASGQKINYEKSEV 725



 Score = 51.6 bits (122), Expect(4) = 5e-37
 Identities = 29/91 (31%), Positives = 49/91 (53%)
 Frame = +1

Query: 673  NLEFYLSVKKNGGLGIKNMELENQAHLTRIFWYILSNPSSLLFQQLQGKYFNSSVNMLNS 852
            N +   ++K  GG+G K++ + N A L R  W +   P SLL + ++ KYF  + + LN+
Sbjct: 844  NWDSMCNLKCFGGMGFKDLTIFNDALLGRQAWRLTREPQSLLGRVMKAKYF-PNCDFLNA 902

Query: 853  ELKPDFSWFWQGMHHIKSLIVDNSMW*VGMG 945
             L    S+ W  +   K+L+ +  +W VG G
Sbjct: 903  PLGHSSSYSWSSIWSSKALLKEGVIWRVGNG 933



 Score = 45.8 bits (107), Expect(4) = 5e-37
 Identities = 24/71 (33%), Positives = 35/71 (49%)
 Frame = +2

Query: 488 WKSKLLFQATITVLIKSISSTILVFHMSTFLLPHNVTTTINALQRDIWWGTGSGKSIPLH 667
           WK KLL +A   VL+KS+   I  + M  +  P  +   I +     WWG+ S     +H
Sbjct: 783 WKEKLLSRAGKEVLLKSVIQAIPTYLMGVYKFPVFIIQKIQSAMARFWWGS-SDTQRKIH 841

Query: 668 LKTWNSIYQLK 700
            K W+S+  LK
Sbjct: 842 WKNWDSMCNLK 852



 Score = 34.3 bits (77), Expect(4) = 5e-37
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 363 NLLKMRSIHIGEKYLGSPLFLGQPNSMIFNDLITKVNSRMAVGRVSCFSR 512
           N+L MR +   EKYLG P   G+    IF+ LI ++  ++   +    SR
Sbjct: 741 NILNMRQVDRHEKYLGIPSISGRSKKAIFDSLIDRIWKKLQGWKEKLLSR 790


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score = 93.2 bits (230), Expect(4) = 1e-34
 Identities = 43/98 (43%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
 Frame = +1

Query: 55  LRQGDPLSPILFILCMEVLSRIMQQKIEENKMHGISISKNSSPISHLLFVDDAFIYCRAN 234
           LRQGDPLSP LF++C E LS +++   E+  +HG+ I    SPISHL F DD+ ++ RA 
Sbjct: 642 LRQGDPLSPFLFVVCAEGLSTLLRDAEEKKVIHGVKIGHRVSPISHLFFADDSLLFIRAT 701

Query: 235 LDETRALLDALNSFCSITGQEINFEKSGV-HSKNIGPD 345
            +E   ++D L+++ + +GQ++N EKS + +S+N+ PD
Sbjct: 702 EEEVENVMDILSTYEAASGQKLNMEKSEMSYSRNLEPD 739



 Score = 53.5 bits (127), Expect(4) = 1e-34
 Identities = 27/72 (37%), Positives = 46/72 (63%)
 Frame = +1

Query: 697  KKNGGLGIKNMELENQAHLTRIFWYILSNPSSLLFQQLQGKYFNSSVNMLNSELKPDFSW 876
            KK GGLGI+N ++ N+A L +  W IL+ P SL+ + ++GKYF  S N L + + P+ S+
Sbjct: 857  KKEGGLGIRNFDVFNRALLAKQAWRILTKPDSLMARVIKGKYFPRS-NFLEARVSPNMSF 915

Query: 877  FWQGMHHIKSLI 912
              + +   +++I
Sbjct: 916  TCKSILSARAVI 927



 Score = 40.8 bits (94), Expect(4) = 1e-34
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = +2

Query: 488 WKSKLLFQATITVLIKSISSTILVFHMSTFLLPHNVTTTINALQRDIWWG 637
           WK K L QA   VLIK+++  I  + M  F++P ++   I  + R+ +WG
Sbjct: 788 WKGKYLSQAGREVLIKAVAQAIPTYAMQCFVIPKSIIDGIEKMCRNFFWG 837



 Score = 26.6 bits (57), Expect(4) = 1e-34
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 369 LKMRSIHIGEKYLGSPLFLGQPNSMIFNDLITKV 470
           L  +++   EKYLG P F+G     +F  +  +V
Sbjct: 748 LAFKTVEGHEKYLGLPTFIGSSKKRVFQAIQDRV 781


>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 82.0 bits (201), Expect(4) = 9e-34
 Identities = 37/89 (41%), Positives = 60/89 (67%)
 Frame = +1

Query: 55  LRQGDPLSPILFILCMEVLSRIMQQKIEENKMHGISISKNSSPISHLLFVDDAFIYCRAN 234
           LR GDPLSP LFIL  +  S+++Q+K++E ++HG   S++   ISHL F D + ++ RA+
Sbjct: 637 LRHGDPLSPYLFILIADAFSKMIQKKVQEKQLHGAKASRSGPVISHLFFADVSLLFTRAS 696

Query: 235 LDETRALLDALNSFCSITGQEINFEKSGV 321
             E   +++ LN +   +GQ+IN++KS V
Sbjct: 697 RQECAIIVEILNLYEQASGQKINYDKSEV 725



 Score = 49.7 bits (117), Expect(4) = 9e-34
 Identities = 26/91 (28%), Positives = 52/91 (57%)
 Frame = +1

Query: 673  NLEFYLSVKKNGGLGIKNMELENQAHLTRIFWYILSNPSSLLFQQLQGKYFNSSVNMLNS 852
            N +   ++K  GG+G +++ + N A L R  W ++  P SLL + ++ KY+ S+ + L++
Sbjct: 844  NWDSLCTLKCFGGMGFRDLRVFNDALLGRQAWRLVREPHSLLARVMKAKYY-SNHDFLDA 902

Query: 853  ELKPDFSWFWQGMHHIKSLIVDNSMW*VGMG 945
             L    S+ W+ +   K+L+ +  +W +G G
Sbjct: 903  PLGVSTSYSWRSIWSSKALLKEGMVWRIGNG 933



 Score = 48.5 bits (114), Expect(4) = 9e-34
 Identities = 24/71 (33%), Positives = 38/71 (53%)
 Frame = +2

Query: 488 WKSKLLFQATITVLIKSISSTILVFHMSTFLLPHNVTTTINALQRDIWWGTGSGKSIPLH 667
           WK KLL +A   +L+KS+   I  + M  + LP ++   I++     WWG+ S     +H
Sbjct: 783 WKEKLLSRAGKEILLKSVIQAIPTYLMGVYKLPCSIIQKIHSAMARFWWGS-SDTQRRIH 841

Query: 668 LKTWNSIYQLK 700
            K W+S+  LK
Sbjct: 842 WKNWDSLCTLK 852



 Score = 30.8 bits (68), Expect(4) = 9e-34
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +3

Query: 363 NLLKMRSIHIGEKYLGSPLFLGQPNSMIFNDLITKVNSRMAVGRVSCFSR 512
           N+L+M+ +    KYLG P   G+  + IF+ L+ ++  ++   +    SR
Sbjct: 741 NILQMKQVERHMKYLGIPSITGRSRTAIFDSLMDRIWKKLQGWKEKLLSR 790


>gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 653

 Score = 98.2 bits (243), Expect(4) = 7e-33
 Identities = 47/102 (46%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
 Frame = +1

Query: 34  PLLVTLSLRQGDPLSPILFILCMEVLSRIMQQKIEENKMHGISISKNSSPISHLLFVDDA 213
           P+     LRQGDPLSP LFILC E +S +++Q    N +HG+ + K +  +SHLLF DD+
Sbjct: 218 PIYPGRGLRQGDPLSPYLFILCAEGMSTLIKQAERNNILHGVKVCKRAPTVSHLLFADDS 277

Query: 214 FIYCRANLDETRALLDALNSFCSITGQEINFEKSGVH-SKNI 336
           F++ RAN +ETRAL D L+++ + + Q IN +KS ++ S+N+
Sbjct: 278 FLFFRANENETRALKDILDTYANASDQLINMQKSEIYFSRNV 319



 Score = 47.8 bits (112), Expect(4) = 7e-33
 Identities = 24/70 (34%), Positives = 36/70 (51%)
 Frame = +2

Query: 494 SKLLFQATITVLIKSISSTILVFHMSTFLLPHNVTTTINALQRDIWWGTGSGKSIPLHLK 673
           SK+L QA   VLIKS++  I  + MS FLLPH++   I  +    WWG  +     +   
Sbjct: 373 SKMLSQAGKEVLIKSVAQAIPSYCMSVFLLPHSIADDIEKMLNSFWWGMKNEGRGGIRWM 432

Query: 674 TWNSIYQLKK 703
           +W  +   K+
Sbjct: 433 SWERLTMRKE 442



 Score = 37.4 bits (85), Expect(4) = 7e-33
 Identities = 20/83 (24%), Positives = 42/83 (50%)
 Frame = +1

Query: 697 KKNGGLGIKNMELENQAHLTRIFWYILSNPSSLLFQQLQGKYFNSSVNMLNSELKPDFSW 876
           K+ GG+G +++   + A   +  W  L+NP +++ +  + KYF +  N L + L  + S+
Sbjct: 441 KEWGGMGFRHIHGFDLAMSGKQCWNFLTNPDAMVSRIFKAKYFTNE-NFLGASLGHNPSY 499

Query: 877 FWQGMHHIKSLIVDNSMW*VGMG 945
            W+ +   +  +     W +G G
Sbjct: 500 VWRSIWSSRIFLKTGYQWRIGDG 522



 Score = 24.6 bits (52), Expect(4) = 7e-33
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 399 KYLGSPLFLGQPNSMIFNDLITKVNSRMA 485
           KYLG P  +G+    IFN +  ++ +R++
Sbjct: 341 KYLGLPSMIGRSKKSIFNYIKDRIWNRIS 369


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score = 90.1 bits (222), Expect(3) = 1e-31
 Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
 Frame = +1

Query: 55  LRQGDPLSPILFILCMEVLSRIMQQKIEENKMHGISISKNSSPISHLLFVDDAFIYCRAN 234
           LRQGDPLSP LFILC EVL   +++   +N + GI ++  S  +SHLLF DD+  +C+AN
Sbjct: 417 LRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKAN 476

Query: 235 LDETRALLDALNSFCSITGQEINFEKSGVH-SKNIGPDIAFDIRTCL 372
            ++   +L+ L  + S++GQ+INF KS +     +   I  DI+  L
Sbjct: 477 KEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLIL 523



 Score = 49.3 bits (116), Expect(3) = 1e-31
 Identities = 29/85 (34%), Positives = 46/85 (54%)
 Frame = +1

Query: 691 SVKKNGGLGIKNMELENQAHLTRIFWYILSNPSSLLFQQLQGKYFNSSVNMLNSELKPDF 870
           S K +GGLG +N++  N A L +  W +++ P SL  +  +G+YF  S N L+S      
Sbjct: 630 SSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKS-NPLDSIKSYSP 688

Query: 871 SWFWQGMHHIKSLIVDNSMW*VGMG 945
           S+ W+ M   +SL+    +  VG G
Sbjct: 689 SYGWRSMISARSLVYKGLIKRVGSG 713



 Score = 44.3 bits (103), Expect(3) = 1e-31
 Identities = 21/71 (29%), Positives = 38/71 (53%)
 Frame = +2

Query: 488 WKSKLLFQATITVLIKSISSTILVFHMSTFLLPHNVTTTINALQRDIWWGTGSGKSIPLH 667
           W +K L +    V+IKS+++T+  + MS F LP  +T+ + +     WW + +G S  +H
Sbjct: 563 WSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWW-SSNGDSRGMH 621

Query: 668 LKTWNSIYQLK 700
              W+ +   K
Sbjct: 622 WMAWDKLCSSK 632