BLASTX nr result

ID: Coptis23_contig00030458 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030458
         (374 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273683.2| PREDICTED: cytosolic endo-beta-N-acetylgluco...    83   2e-14
ref|XP_004169563.1| PREDICTED: cytosolic endo-beta-N-acetylgluco...    80   1e-13
ref|XP_004148186.1| PREDICTED: cytosolic endo-beta-N-acetylgluco...    80   1e-13
ref|NP_196165.3| mannosyl-glycoprotein endo-beta-N-acetylglucosa...    78   7e-13
dbj|BAB09989.1| unnamed protein product [Arabidopsis thaliana]         78   7e-13

>ref|XP_002273683.2| PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase-like [Vitis
           vinifera]
          Length = 690

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 36/54 (66%), Positives = 44/54 (81%)
 Frame = +3

Query: 195 SQENESFLAIDPPPFDPLKPSTPISYPLQKLEDLESRSYFKSFHYPFNIASVPL 356
           SQE     +  PPPFDP +PSTPISYP++ L++LESRSYF SFHYPFN+ASVP+
Sbjct: 2   SQEQLQASSASPPPFDPSQPSTPISYPIKTLQELESRSYFSSFHYPFNVASVPI 55



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 22/27 (81%), Positives = 25/27 (92%)
 Frame = +3

Query: 3   FVYFSHNLVTIPPTCWTNAAHTHGVKM 83
           FVYFSH+LVT+PP CWTNAAH HGVK+
Sbjct: 102 FVYFSHSLVTLPPPCWTNAAHKHGVKV 128


>ref|XP_004169563.1| PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase-like
           [Cucumis sativus]
          Length = 760

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 41/80 (51%), Positives = 53/80 (66%), Gaps = 6/80 (7%)
 Frame = +3

Query: 135 RNLFR--KMQNCL----WFSKAKDSSSQENESFLAIDPPPFDPLKPSTPISYPLQKLEDL 296
           RNL R  +  +C     +F K    SS   +S     PPPFDP +PS PI+YP++ L+DL
Sbjct: 53  RNLVRTIRFHSCKTLPSFFFKMAQQSSVSTKSESGPPPPPFDPTEPSIPIAYPIKTLKDL 112

Query: 297 ESRSYFKSFHYPFNIASVPL 356
           ESR+YF SFHYPFNI++VPL
Sbjct: 113 ESRAYFNSFHYPFNISTVPL 132



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 21/27 (77%), Positives = 24/27 (88%)
 Frame = +3

Query: 3   FVYFSHNLVTIPPTCWTNAAHTHGVKM 83
           FVYFSH+LVT+PP CWTN AH HGVK+
Sbjct: 179 FVYFSHDLVTLPPPCWTNTAHRHGVKV 205


>ref|XP_004148186.1| PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase-like
           [Cucumis sativus]
          Length = 760

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 41/80 (51%), Positives = 53/80 (66%), Gaps = 6/80 (7%)
 Frame = +3

Query: 135 RNLFR--KMQNCL----WFSKAKDSSSQENESFLAIDPPPFDPLKPSTPISYPLQKLEDL 296
           RNL R  +  +C     +F K    SS   +S     PPPFDP +PS PI+YP++ L+DL
Sbjct: 53  RNLVRTIRFHSCKTLPSFFFKMAQQSSVSTKSESGPPPPPFDPTEPSIPIAYPIKTLKDL 112

Query: 297 ESRSYFKSFHYPFNIASVPL 356
           ESR+YF SFHYPFNI++VPL
Sbjct: 113 ESRAYFNSFHYPFNISTVPL 132



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 21/27 (77%), Positives = 24/27 (88%)
 Frame = +3

Query: 3   FVYFSHNLVTIPPTCWTNAAHTHGVKM 83
           FVYFSH+LVT+PP CWTN AH HGVK+
Sbjct: 179 FVYFSHDLVTLPPPCWTNTAHRHGVKV 205


>ref|NP_196165.3| mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
           [Arabidopsis thaliana] gi|332003493|gb|AED90876.1|
           mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
           [Arabidopsis thaliana]
          Length = 680

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 34/46 (73%), Positives = 40/46 (86%)
 Frame = +3

Query: 219 AIDPPPFDPLKPSTPISYPLQKLEDLESRSYFKSFHYPFNIASVPL 356
           A  PPPFDP KPSTPIS+P++ L+DL+SRSYF SFHYPFN +SVPL
Sbjct: 7   APSPPPFDPTKPSTPISFPIKTLQDLKSRSYFDSFHYPFNRSSVPL 52



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 21/27 (77%), Positives = 24/27 (88%)
 Frame = +3

Query: 3   FVYFSHNLVTIPPTCWTNAAHTHGVKM 83
           FVYFSH+LVT+PP CWTN AH HGVK+
Sbjct: 101 FVYFSHSLVTLPPPCWTNTAHRHGVKV 127


>dbj|BAB09989.1| unnamed protein product [Arabidopsis thaliana]
          Length = 639

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 34/46 (73%), Positives = 40/46 (86%)
 Frame = +3

Query: 219 AIDPPPFDPLKPSTPISYPLQKLEDLESRSYFKSFHYPFNIASVPL 356
           A  PPPFDP KPSTPIS+P++ L+DL+SRSYF SFHYPFN +SVPL
Sbjct: 7   APSPPPFDPTKPSTPISFPIKTLQDLKSRSYFDSFHYPFNRSSVPL 52



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 21/27 (77%), Positives = 24/27 (88%)
 Frame = +3

Query: 3   FVYFSHNLVTIPPTCWTNAAHTHGVKM 83
           FVYFSH+LVT+PP CWTN AH HGVK+
Sbjct: 101 FVYFSHSLVTLPPPCWTNTAHRHGVKV 127


Top