BLASTX nr result

ID: Coptis23_contig00030434 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030434
         (473 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera]    62   3e-12
emb|CAN62182.1| hypothetical protein VITISV_044400 [Vitis vinifera]    50   2e-08
emb|CAN70473.1| hypothetical protein VITISV_037490 [Vitis vinifera]    50   6e-08
ref|XP_002330141.1| predicted protein [Populus trichocarpa] gi|2...    62   6e-08
emb|CAN82610.1| hypothetical protein VITISV_021745 [Vitis vinifera]    52   7e-08

>emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera]
          Length = 1361

 Score = 62.4 bits (150), Expect(2) = 3e-12
 Identities = 27/61 (44%), Positives = 39/61 (63%)
 Frame = +3

Query: 45  LSNVFSGMQMSQSGEPSWYFDTGAINHMTGDTRSFAQMSDYGGSDQVMLGNGESLAIAHT 224
           L+  FS   +    +  W+ D+GA +HMT DT    Q   Y G+++VM+GNG+SLAI+HT
Sbjct: 416 LAEAFSAYSIQDFNDSEWFPDSGATSHMTSDTEGVNQPDVYSGNERVMVGNGQSLAISHT 475

Query: 225 G 227
           G
Sbjct: 476 G 476



 Score = 33.9 bits (76), Expect(2) = 3e-12
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +1

Query: 223 LGRCEGGLYPFRSMRPHRFAFSASSTSP---FWHRRLGHP 333
           +GRCE GLY     R H    + SS       WH RLGHP
Sbjct: 501 VGRCENGLYVL-DRRHHALVSTTSSPRASVRLWHTRLGHP 539


>emb|CAN62182.1| hypothetical protein VITISV_044400 [Vitis vinifera]
          Length = 920

 Score = 49.7 bits (117), Expect(3) = 2e-08
 Identities = 24/68 (35%), Positives = 41/68 (60%)
 Frame = +3

Query: 24  NRNNVDQLSNVFSGMQMSQSGEPSWYFDTGAINHMTGDTRSFAQMSDYGGSDQVMLGNGE 203
           N+NN+  +   FS    + S + SWY D+GA +H+T +  +    S Y G+D+V +GN +
Sbjct: 175 NQNNILAMVASFS----NSSADESWYLDSGASHHLTQNLGNLTSTSPYTGTDRVTIGNXK 230

Query: 204 SLAIAHTG 227
            L+I++ G
Sbjct: 231 HLSISNIG 238



 Score = 26.6 bits (57), Expect(3) = 2e-08
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 408 CKDCALGKSTRLPFSLNETRS 470
           C DC L KS RLP  L+  R+
Sbjct: 337 CSDCQLAKSHRLPTQLSNFRA 357



 Score = 25.8 bits (55), Expect(3) = 2e-08
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 14/49 (28%)
 Frame = +1

Query: 226 GRCEGGLYPF---RSMRPH-----------RFAFSASSTSPFWHRRLGH 330
           G+ E GLY F    + +P+            F+ +  + +  WH RLGH
Sbjct: 264 GKLENGLYKFPVFSNKKPYSSVNNASAFHSHFSSTIENKAELWHNRLGH 312


>emb|CAN70473.1| hypothetical protein VITISV_037490 [Vitis vinifera]
          Length = 786

 Score = 49.7 bits (117), Expect(2) = 6e-08
 Identities = 20/46 (43%), Positives = 29/46 (63%)
 Frame = +3

Query: 90  PSWYFDTGAINHMTGDTRSFAQMSDYGGSDQVMLGNGESLAIAHTG 227
           P W  D+G  +H+T D  + +  + Y GSD +M+G+G SL I HTG
Sbjct: 86  PQWLLDSGVSHHVTTDLSNLSLHTPYTGSDDIMIGDGSSLLITHTG 131



 Score = 32.0 bits (71), Expect(2) = 6e-08
 Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +1

Query: 202 NLLLLHTLGRCEGGLYPFRSMRPH---RFAFSASSTSPF-WHRRLGHP 333
           +LL+ HT G   GG  PF           AFS+  TS F WH RLGHP
Sbjct: 124 SLLITHT-GTSHGG-NPFEGSHERWAPLVAFSSVKTSSFEWHHRLGHP 169


>ref|XP_002330141.1| predicted protein [Populus trichocarpa] gi|222871275|gb|EEF08406.1|
           predicted protein [Populus trichocarpa]
          Length = 443

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 7/134 (5%)
 Frame = +3

Query: 81  SGEPSWYFDTGAINHMTGDTRSFAQMSDYGGSDQVMLGNGESLAIAHTGPM*RWPLXXXX 260
           + +P+WY DTGA +HMT    + +Q   YGG   V +GNG+S++++HTGP          
Sbjct: 301 AADPNWYSDTGATHHMTAMPINNSQ--PYGGPHNVYIGNGDSMSVSHTGPC----KDGLY 354

Query: 261 XXXXXXXXXXXXXXTLLASQTWTSAPKVIQILGSNKC-----LGPSFN--FTHPHFCKDC 419
                           + S  W +       LG +       L P+ N   + P F +DC
Sbjct: 355 PFNLSSVFTSPQALASVHSSIWHNR------LGHSSSNVFARLSPTINSKLSFPSFYRDC 408

Query: 420 ALGKSTRLPFSLNE 461
           AL KS +LPF+ N+
Sbjct: 409 ALNKSHQLPFNSNK 422


>emb|CAN82610.1| hypothetical protein VITISV_021745 [Vitis vinifera]
          Length = 751

 Score = 52.0 bits (123), Expect(2) = 7e-08
 Identities = 21/47 (44%), Positives = 33/47 (70%)
 Frame = +3

Query: 87  EPSWYFDTGAINHMTGDTRSFAQMSDYGGSDQVMLGNGESLAIAHTG 227
           + SW+FDTGA +H++   ++ + +  Y G+DQV +G+G SL I HTG
Sbjct: 183 QDSWFFDTGATHHLSHSAQTLSCVQPYLGTDQVTIGDGNSLPILHTG 229



 Score = 29.3 bits (64), Expect(2) = 7e-08
 Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +1

Query: 217 HTLGRCEGGLYPFRSMRPHRFAFSASSTSP--FWHRRLGHP 333
           H L     G   F S  P R   + SS S    WH RLGHP
Sbjct: 234 HELAETPTGHESFSSSSPPRAFVTTSSFSDGAIWHSRLGHP 274


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