BLASTX nr result
ID: Coptis23_contig00030425
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00030425
(1042 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002450843.1| hypothetical protein SORBIDRAFT_05g019526 [S... 65 3e-23
ref|XP_002459653.1| hypothetical protein SORBIDRAFT_02g008045 [S... 54 3e-19
ref|XP_002438099.1| hypothetical protein SORBIDRAFT_10g007985 [S... 74 3e-18
gb|AAD37019.2| putative non-LTR retrolelement reverse transcript... 67 2e-17
gb|AAV43829.1| hypothetical protein [Oryza sativa Japonica Group... 54 1e-16
>ref|XP_002450843.1| hypothetical protein SORBIDRAFT_05g019526 [Sorghum bicolor]
gi|241936686|gb|EES09831.1| hypothetical protein
SORBIDRAFT_05g019526 [Sorghum bicolor]
Length = 1209
Score = 65.1 bits (157), Expect(3) = 3e-23
Identities = 31/83 (37%), Positives = 48/83 (57%)
Frame = +1
Query: 28 WETLSQLQPHNHEPWICMGDFNDVLNHDDKCGVWPINISQTNRFRTAVNECALMDLGFVG 207
W+ L ++P++ PW+C+GDFN+VL+ + GV + +Q FR V+ C L DLG+ G
Sbjct: 382 WDMLKSIKPNSSLPWVCIGDFNEVLHRSEHLGVQERSYAQIAGFREMVDVCGLCDLGYEG 441
Query: 208 SIFTWCNNQKGLACLYKRLDGAL 276
+T+ G + RLD AL
Sbjct: 442 RSWTYEKKVTGGSFCRVRLDRAL 464
Score = 54.3 bits (129), Expect(3) = 3e-23
Identities = 26/77 (33%), Positives = 43/77 (55%)
Frame = +1
Query: 631 KEQDLLMSYNHLLYLQEVHWAQKSRFDWRCYGDLNTKFFNTVVVRKRSRANIERLQSVDG 810
K ++ +M NH +E+ W Q++R W GD NT FF+ R+R R I +L++ +G
Sbjct: 591 KIKERIMELNHR---EELMWKQRARIQWLSAGDKNTHFFHLRASRRRKRNMIVKLKTANG 647
Query: 811 SFVYDREDIGNCLVNFY 861
DR+++G +FY
Sbjct: 648 QVTEDRKEMGQMATSFY 664
Score = 36.2 bits (82), Expect(3) = 3e-23
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +3
Query: 333 ILSLRLEPSNEKLKRPFRFEAMWVTDVSCQAVIREAMDEDFVGSPSYTLCRNLALCRNKL 512
+L ++ +R FR+E MW T VI + + ++ L L KL
Sbjct: 492 VLQWEAAQGRQRQRRQFRYETMWETHEDFANVISQTWQRGTKATTAHELQSKLRSVSCKL 551
Query: 513 IHWNHHHFGNLSYQL 557
HW FG +S +L
Sbjct: 552 NHWEVRTFGQVSREL 566
>ref|XP_002459653.1| hypothetical protein SORBIDRAFT_02g008045 [Sorghum bicolor]
gi|241923030|gb|EER96174.1| hypothetical protein
SORBIDRAFT_02g008045 [Sorghum bicolor]
Length = 723
Score = 53.5 bits (127), Expect(3) = 3e-19
Identities = 29/87 (33%), Positives = 42/87 (48%)
Frame = +1
Query: 16 RRWQWETLSQLQPHNHEPWICMGDFNDVLNHDDKCGVWPINISQTNRFRTAVNECALMDL 195
R W L ++ + PW C+GDFN+VL+ + GV + +Q FR V+ C DL
Sbjct: 415 RHKTWSLLKFIKASSPLPWACVGDFNEVLHQSEHVGVQERSRAQIAGFREMVDVCGFTDL 474
Query: 196 GFVGSIFTWCNNQKGLACLYKRLDGAL 276
G+ G +T+ G RLD L
Sbjct: 475 GYEGRSWTFEKKVAGGTYCRTRLDRGL 501
Score = 50.1 bits (118), Expect(3) = 3e-19
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +1
Query: 664 LLYLQEVHWAQKSRFDWRCYGDLNTKFFNTVVVRKRSRANIERLQSVDGSFVYDREDI 837
L + +E+ W Q+SR W GD NT+FF+ ++R R I+RL+ DG F D ++
Sbjct: 636 LNHREELMWRQRSRVMWLAAGDRNTRFFHLRASKRRKRNRIQRLKKSDGQFTEDESEL 693
Score = 38.5 bits (88), Expect(3) = 3e-19
Identities = 22/77 (28%), Positives = 33/77 (42%)
Frame = +3
Query: 333 ILSLRLEPSNEKLKRPFRFEAMWVTDVSCQAVIREAMDEDFVGSPSYTLCRNLALCRNKL 512
+L R K KR FR+E MW T + + ++ D + L L N L
Sbjct: 529 LLQWRSVQRPRKQKRQFRYEQMWETHLDFSNTLADSWRRDGEAISTLELKAKLKGVANHL 588
Query: 513 IHWNHHHFGNLSYQLHR 563
+ W+ FGN+ +L R
Sbjct: 589 VQWDRTTFGNVREELRR 605
>ref|XP_002438099.1| hypothetical protein SORBIDRAFT_10g007985 [Sorghum bicolor]
gi|241916322|gb|EER89466.1| hypothetical protein
SORBIDRAFT_10g007985 [Sorghum bicolor]
Length = 649
Score = 74.3 bits (181), Expect(3) = 3e-18
Identities = 37/93 (39%), Positives = 52/93 (55%)
Frame = +1
Query: 10 QIRRWQWETLSQLQPHNHEPWICMGDFNDVLNHDDKCGVWPINISQTNRFRTAVNECALM 189
++R W+ L L + PW+C GDFN+VL ++ G + Q + FR AV C LM
Sbjct: 378 ELRGRSWDCLKFLNTQSELPWLCTGDFNEVLEAHEQFGGQSRSERQMDGFREAVQVCGLM 437
Query: 190 DLGFVGSIFTWCNNQKGLACLYKRLDGALCYSA 288
DLGF+G +TW N Q+G+ + RLD L A
Sbjct: 438 DLGFIGLPYTWDNRQEGINNVKVRLDRGLANPA 470
Score = 33.9 bits (76), Expect(3) = 3e-18
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +3
Query: 345 RLEPSNEKLKRPFRFEAMWVTDVSCQAVIREAMDEDFVGSPSYTLCRNLALCRNKLIHWN 524
R +PS + +R FR+E MW D S + A E + + L L W+
Sbjct: 499 RAKPSGRRARRRFRYENMWRRDPSYTLAVESAWQEPDDQASMSQVANRLGELGRSLSDWD 558
Query: 525 HHHFGNLSYQL 557
FG++ L
Sbjct: 559 QTTFGSVRKNL 569
Score = 30.4 bits (67), Expect(3) = 3e-18
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 628 KKEQDLLMSYNHLLYLQEVHWAQKSRFDWRCYGDLNTKFFNTVVVRKRSRANIERLQSV 804
+ E+ ++ + +L +E Q+SR +W GD NT FF + R RA ++ ++
Sbjct: 590 RDERRVMKQISEMLSREEEMEKQRSRVEWLREGDRNTAFFQ---AKSRERAKCNQINAL 645
>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 855
Score = 67.4 bits (163), Expect(3) = 2e-17
Identities = 33/84 (39%), Positives = 55/84 (65%)
Frame = +1
Query: 613 SDADIKKEQDLLMSYNHLLYLQEVHWAQKSRFDWRCYGDLNTKFFNTVVVRKRSRANIER 792
+D + KE++L+ ++ +L +EV W QKSR W GD NTK+F+T+ V +R R IE
Sbjct: 728 TDNLLSKEEELIKEFDVVLEQEEVLWFQKSREKWVELGDRNTKYFHTMTVVRRRRNRIEM 787
Query: 793 LQSVDGSFVYDREDIGNCLVNFYS 864
L++ DGS+V ++++ V++YS
Sbjct: 788 LKADDGSWVSQQQELEKMAVDYYS 811
Score = 37.0 bits (84), Expect(3) = 2e-17
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = +3
Query: 342 LRLEPS--NEKLKRPFRFEAMWVTDVSCQAVIREAMDEDFVGSPSYTLCRNLALCRNKLI 515
++LEP + L+RPFRFEA W+T + +++ + + + G LA ++KL
Sbjct: 642 IQLEPEVRSNPLRRPFRFEAAWLTHSGFKDLLQASWNTE--GETPVA----LAALKSKLK 695
Query: 516 HWNHHHFGNLSYQLHRTTTWSNSVEV 593
WN FG+++ R + N ++V
Sbjct: 696 KWNREVFGDVN---RRKESLMNEIKV 718
Score = 31.2 bits (69), Expect(3) = 2e-17
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 115 KCGVWPINISQTNRFRTAVNECALM-DLGFVGSIFTWCNNQKGLACLYKRLDGALC 279
+ G+W S +R +V+E ++ D+GF G+ FTW + + KRLD LC
Sbjct: 563 RSGLW----SLLSRIVQSVDEPIIVGDMGFKGNKFTWKRGRVESTFVAKRLDRVLC 614
>gb|AAV43829.1| hypothetical protein [Oryza sativa Japonica Group]
gi|55168037|gb|AAV43905.1| hypothetical protein [Oryza
sativa Japonica Group]
Length = 796
Score = 53.5 bits (127), Expect(3) = 1e-16
Identities = 31/95 (32%), Positives = 49/95 (51%)
Frame = +1
Query: 4 KPQIRRWQWETLSQLQPHNHEPWICMGDFNDVLNHDDKCGVWPINISQTNRFRTAVNECA 183
+ Q R W L +++ + PW+ +GDFN+ + + + Q FR A+ +C
Sbjct: 438 RSQDRLKMWTLLRRIKSNAALPWLMIGDFNEAMWQSEHWSRVRRSERQMKDFREALADCD 497
Query: 184 LMDLGFVGSIFTWCNNQKGLACLYKRLDGALCYSA 288
L DLGF G +T+ NNQ+G + RLD A+ A
Sbjct: 498 LHDLGFHGVPWTYDNNQRGANNVRVRLDRAVASPA 532
Score = 48.5 bits (114), Expect(3) = 1e-16
Identities = 27/105 (25%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Frame = +1
Query: 550 INCTEQQLGQIQLRLPHSGVL-SDADIKKEQDLLMSYNHLLYLQEVHWAQKSRFDWRCYG 726
I ++LG++++ +G+L S+ ++KK ++ L +L +E+ W Q+S+ W G
Sbjct: 630 IESRRKKLGELRM----AGMLDSEPEVKKIKEQLQE---MLRREEIWWRQRSQITWLKEG 682
Query: 727 DLNTKFFNTVVVRKRSRANIERLQSVDGSFVYDREDIGNCLVNFY 861
D NTK+F+ + + +++L+ +GS V + +++G +F+
Sbjct: 683 DKNTKYFHLKASWRARKNKVKKLRRPNGSLVSNEKEMGEVARDFF 727
Score = 30.8 bits (68), Expect(3) = 1e-16
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +3
Query: 318 TPINKILSLRLEPSNEKLK----RPFRFEAMWVTDVSCQAVIREAMDEDFVGSPSYTLCR 485
TP + + L LE E+L + R+EA+W + S +V+++A E V
Sbjct: 547 TPSSDHVPLLLERLEEELVHNSVKISRYEAIWEREESFDSVVQQAWGEGEVVRNLGDFKT 606
Query: 486 NLALCRNKLIHWNHHHFGNL 545
+A ++L+ W+ GN+
Sbjct: 607 KMAYTMDELVKWSKSKIGNI 626