BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030334
         (400 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containi...   110   9e-48
emb|CBI32034.3| unnamed protein product [Vitis vinifera]              110   9e-48
ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containi...   108   2e-47
ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containi...   111   4e-46
ref|XP_002325053.1| predicted protein [Populus trichocarpa] gi|2...   105   5e-46

>ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  110 bits (275), Expect(2) = 9e-48
 Identities = 54/75 (72%), Positives = 61/75 (81%)
 Frame = -3

Query: 227 DISLDRLESAGYVPDLSQAPMVDEHGDEKQQSLSLHSERLAISFGLLNARPGVPIRIFKN 48
           D+  +R+E  GY PD SQAPMVDE  D KQ SL LHSERLAI+FGLL  +PG+PIRIFKN
Sbjct: 504 DVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKN 563

Query: 47  LRVCNDCHTVTKLIS 3
           LRVCN+CH VTKLIS
Sbjct: 564 LRVCNNCHQVTKLIS 578



 Score =  105 bits (261), Expect(2) = 9e-48
 Identities = 46/64 (71%), Positives = 57/64 (89%)
 Frame = -1

Query: 400 VLLSRVYASANRWNDVGLVRRLMSEKGITKEPGCSLIEIDGEVHQFLAGDTSHPSSKEIY 221
           VLLSRVYASA+RWNDVG+VR+LM++KG+ KEPGCS IEIDG  H+F AGDTSHP ++EIY
Sbjct: 441 VLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIY 500

Query: 220 RSID 209
            ++D
Sbjct: 501 SALD 504


>emb|CBI32034.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score =  110 bits (275), Expect(2) = 9e-48
 Identities = 54/75 (72%), Positives = 61/75 (81%)
 Frame = -3

Query: 227 DISLDRLESAGYVPDLSQAPMVDEHGDEKQQSLSLHSERLAISFGLLNARPGVPIRIFKN 48
           D+  +R+E  GY PD SQAPMVDE  D KQ SL LHSERLAI+FGLL  +PG+PIRIFKN
Sbjct: 490 DVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKN 549

Query: 47  LRVCNDCHTVTKLIS 3
           LRVCN+CH VTKLIS
Sbjct: 550 LRVCNNCHQVTKLIS 564



 Score =  105 bits (261), Expect(2) = 9e-48
 Identities = 46/64 (71%), Positives = 57/64 (89%)
 Frame = -1

Query: 400 VLLSRVYASANRWNDVGLVRRLMSEKGITKEPGCSLIEIDGEVHQFLAGDTSHPSSKEIY 221
           VLLSRVYASA+RWNDVG+VR+LM++KG+ KEPGCS IEIDG  H+F AGDTSHP ++EIY
Sbjct: 427 VLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIY 486

Query: 220 RSID 209
            ++D
Sbjct: 487 SALD 490


>ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  108 bits (271), Expect(2) = 2e-47
 Identities = 51/71 (71%), Positives = 60/71 (84%)
 Frame = -3

Query: 215 DRLESAGYVPDLSQAPMVDEHGDEKQQSLSLHSERLAISFGLLNARPGVPIRIFKNLRVC 36
           ++LES GY+PD S APMVDE  D K  +L LHSERLAI+FG+LN++P VPIR+FKNLRVC
Sbjct: 512 EKLESIGYLPDYSGAPMVDEVNDGKLNTLRLHSERLAIAFGILNSKPDVPIRVFKNLRVC 571

Query: 35  NDCHTVTKLIS 3
           NDCH VTKLIS
Sbjct: 572 NDCHRVTKLIS 582



 Score =  105 bits (262), Expect(2) = 2e-47
 Identities = 47/63 (74%), Positives = 57/63 (90%)
 Frame = -1

Query: 400 VLLSRVYASANRWNDVGLVRRLMSEKGITKEPGCSLIEIDGEVHQFLAGDTSHPSSKEIY 221
           VLLS+VYASA RWNDVGL+R+LMSEKG+TKEPGCS+IEIDG VH+F AGDT+HP S+ IY
Sbjct: 445 VLLSKVYASACRWNDVGLLRKLMSEKGVTKEPGCSIIEIDGVVHEFFAGDTTHPKSENIY 504

Query: 220 RSI 212
           + +
Sbjct: 505 KVV 507


>ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  111 bits (278), Expect(2) = 4e-46
 Identities = 54/75 (72%), Positives = 61/75 (81%)
 Frame = -3

Query: 227 DISLDRLESAGYVPDLSQAPMVDEHGDEKQQSLSLHSERLAISFGLLNARPGVPIRIFKN 48
           D+  ++LE  GY PD SQA MVDE  + KQQSL LHSERLAI+FGLLN +PG P+RIFKN
Sbjct: 502 DLIEEKLERRGYSPDCSQATMVDEPDNIKQQSLKLHSERLAIAFGLLNLKPGTPVRIFKN 561

Query: 47  LRVCNDCHTVTKLIS 3
           LRVCNDCH VTKLIS
Sbjct: 562 LRVCNDCHQVTKLIS 576



 Score = 98.6 bits (244), Expect(2) = 4e-46
 Identities = 44/64 (68%), Positives = 54/64 (84%)
 Frame = -1

Query: 400 VLLSRVYASANRWNDVGLVRRLMSEKGITKEPGCSLIEIDGEVHQFLAGDTSHPSSKEIY 221
           V+LSRVYASA +WNDVG++R++M++ G+TKEPGCS IEIDG  H+F AGDTSHP  KEIY
Sbjct: 439 VMLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIEIDGISHEFFAGDTSHPRIKEIY 498

Query: 220 RSID 209
             ID
Sbjct: 499 GVID 502


>ref|XP_002325053.1| predicted protein [Populus trichocarpa] gi|222866487|gb|EEF03618.1|
           predicted protein [Populus trichocarpa]
          Length = 607

 Score =  105 bits (262), Expect(2) = 5e-46
 Identities = 50/71 (70%), Positives = 58/71 (81%)
 Frame = -3

Query: 215 DRLESAGYVPDLSQAPMVDEHGDEKQQSLSLHSERLAISFGLLNARPGVPIRIFKNLRVC 36
           +R++S GY PD SQAPMVDE    K+ SL LHSERLAI+ GLLN +PG+PIRIFKNLRVC
Sbjct: 508 ERIDSTGYKPDYSQAPMVDELNTSKRDSLRLHSERLAIALGLLNLKPGMPIRIFKNLRVC 567

Query: 35  NDCHTVTKLIS 3
           +DCH VT LIS
Sbjct: 568 DDCHKVTGLIS 578



 Score =  104 bits (259), Expect(2) = 5e-46
 Identities = 47/64 (73%), Positives = 56/64 (87%)
 Frame = -1

Query: 400 VLLSRVYASANRWNDVGLVRRLMSEKGITKEPGCSLIEIDGEVHQFLAGDTSHPSSKEIY 221
           VLLSRVYASA+RWNDVGLVR+LM+  GI KEPGCSLIE+DG  H+F AGDTSHP +KEIY
Sbjct: 441 VLLSRVYASASRWNDVGLVRKLMTNNGILKEPGCSLIEVDGVTHEFFAGDTSHPQTKEIY 500

Query: 220 RSID 209
           + ++
Sbjct: 501 QVLN 504