BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030300
         (294 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24452.3| unnamed protein product [Vitis vinifera]              124   8e-27
ref|XP_004146207.1| PREDICTED: pentatricopeptide repeat-containi...   117   1e-24
ref|XP_003629226.1| Pentatricopeptide repeat-containing protein ...   112   2e-23
ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containi...   110   1e-22
gb|ACU21153.1| unknown [Glycine max]                                  110   1e-22

>emb|CBI24452.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  124 bits (311), Expect = 8e-27
 Identities = 55/96 (57%), Positives = 76/96 (79%)
 Frame = +2

Query: 5   APLASGLIAMYGNCGHFGTARDLFFRLPERNIFVWNAMVKCYGMNGNANDALVMFSEMVN 184
           A L SGLIAMY NCG   +ARD+F R+ ++NI VWNA+++CYGM+G+A++AL MFS +++
Sbjct: 247 AALGSGLIAMYANCGLLNSARDVFDRIDDKNIVVWNAIIRCYGMHGHADEALKMFSGLID 306

Query: 185 SGIHPDSISFISVLSACSHAGLVDKGWELFRSMRDY 292
           SG+HPD + F+ +LSA SHAG+V +G ELF  M DY
Sbjct: 307 SGLHPDGVIFLCLLSAFSHAGMVAEGMELFEKMGDY 342



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
 Frame = +2

Query: 11  LASGLIAMYGNCGHFGTARDLFFRLPERNIFVWNAMVKCYGMNGNANDALVMFSEMV--- 181
           + + L+A Y  C   G +R +F  + E++I  WN+M+  Y +NG A+DALV+F  M+   
Sbjct: 144 VGNALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMISGYAINGCADDALVLFHNMLQVQ 203

Query: 182 -NSGIHPDSISFISVLSACSHAGLVDKG 262
            ++   PDS + +++L AC+ A  + +G
Sbjct: 204 GDTVYAPDSATLVAILPACAQAAAIQEG 231


>ref|XP_004146207.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 480

 Score =  117 bits (292), Expect = 1e-24
 Identities = 50/96 (52%), Positives = 71/96 (73%)
 Frame = +2

Query: 5   APLASGLIAMYGNCGHFGTARDLFFRLPERNIFVWNAMVKCYGMNGNANDALVMFSEMVN 184
           APL S LI MYGNCGH   ARD+F R+ ++N+ VW+A+++CYGM+G A++A  MF  +  
Sbjct: 233 APLGSCLICMYGNCGHVNIARDVFDRIDDKNVIVWSAIIRCYGMHGFADEAFNMFRRLEE 292

Query: 185 SGIHPDSISFISVLSACSHAGLVDKGWELFRSMRDY 292
           +G+ PD + F+++LSACSHAGLV KG E++  M  Y
Sbjct: 293 AGVKPDGLIFLNLLSACSHAGLVAKGHEIYEKMEAY 328


>ref|XP_003629226.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355523248|gb|AET03702.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 510

 Score =  112 bits (281), Expect = 2e-23
 Identities = 46/91 (50%), Positives = 70/91 (76%)
 Frame = +2

Query: 20  GLIAMYGNCGHFGTARDLFFRLPERNIFVWNAMVKCYGMNGNANDALVMFSEMVNSGIHP 199
           GLI +Y NCG+   A+ +F ++P+RN+ VW+A+++CYGM+G A +AL MF ++V  G+H 
Sbjct: 263 GLITLYSNCGYIRMAKAVFDQIPDRNVIVWSAIIRCYGMHGFAQEALSMFRQLVELGLHL 322

Query: 200 DSISFISVLSACSHAGLVDKGWELFRSMRDY 292
           D I F+S+LSACSHAG+ ++GW LF++M  Y
Sbjct: 323 DGIVFLSLLSACSHAGMHEEGWHLFQTMETY 353


>ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 503

 Score =  110 bits (275), Expect = 1e-22
 Identities = 43/94 (45%), Positives = 71/94 (75%)
 Frame = +2

Query: 11  LASGLIAMYGNCGHFGTARDLFFRLPERNIFVWNAMVKCYGMNGNANDALVMFSEMVNSG 190
           + +GLI++Y NCG+   AR +F R+ +R++ VW+A+++CYG +G A +AL +F ++V +G
Sbjct: 258 VGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEALALFRQLVGAG 317

Query: 191 IHPDSISFISVLSACSHAGLVDKGWELFRSMRDY 292
           + PD + F+ +LSACSHAGL+++GW LF +M  Y
Sbjct: 318 LRPDGVVFLCLLSACSHAGLLEQGWHLFNAMETY 351



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
 Frame = +2

Query: 11  LASGLIAMYGNCGHFGTARDLFFRLPERNIFVWNAMVKCYGMNGNANDALVMFSEMV--N 184
           + + L+A Y  C     +R +F  +P R+I  WN+M+  Y +NG  +DA+++F +M+   
Sbjct: 155 VGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMISGYTVNGYVDDAILLFYDMLRDE 214

Query: 185 SGIHPDSISFISVLSACSHAGLVDKGW 265
           S   PD  +F++VL A + A  +  G+
Sbjct: 215 SVGGPDHATFVTVLPAFAQAADIHAGY 241


>gb|ACU21153.1| unknown [Glycine max]
          Length = 529

 Score =  110 bits (275), Expect = 1e-22
 Identities = 43/94 (45%), Positives = 71/94 (75%)
 Frame = +2

Query: 11  LASGLIAMYGNCGHFGTARDLFFRLPERNIFVWNAMVKCYGMNGNANDALVMFSEMVNSG 190
           + +GLI++Y NCG+   AR +F R+ +R++ VW+A+++CYG +G A +AL +F ++V +G
Sbjct: 258 VGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEALALFRQLVGAG 317

Query: 191 IHPDSISFISVLSACSHAGLVDKGWELFRSMRDY 292
           + PD + F+ +LSACSHAGL+++GW LF +M  Y
Sbjct: 318 LRPDGVVFLCLLSACSHAGLLEQGWHLFNAMETY 351



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
 Frame = +2

Query: 11  LASGLIAMYGNCGHFGTARDLFFRLPERNIFVWNAMVKCYGMNGNANDALVMFSEMV--N 184
           + + L+A Y  C     +R +F  +P R+I  WN+MV  Y +NG  +DA+++F +M+   
Sbjct: 155 VGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMVSGYTVNGYVDDAILLFYDMLRDE 214

Query: 185 SGIHPDSISFISVLSACSHAGLVDKGW 265
           S   PD  +F++VL A + A  +  G+
Sbjct: 215 SVGGPDHATFVTVLPAFAQAADIHAGY 241