BLASTX nr result

ID: Coptis23_contig00030274 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030274
         (505 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28268.3| unnamed protein product [Vitis vinifera]              111   5e-23
ref|XP_002271152.1| PREDICTED: uncharacterized protein LOC100263...   109   2e-22
ref|XP_004140167.1| PREDICTED: uncharacterized protein LOC101220...   100   1e-19
ref|XP_002328243.1| predicted protein [Populus trichocarpa] gi|2...    93   2e-17
ref|XP_002523866.1| conserved hypothetical protein [Ricinus comm...    92   4e-17

>emb|CBI28268.3| unnamed protein product [Vitis vinifera]
          Length = 181

 Score =  111 bits (278), Expect = 5e-23
 Identities = 48/70 (68%), Positives = 59/70 (84%), Gaps = 2/70 (2%)
 Frame = +3

Query: 99  GWIF--IKMGSKPVKQKKEEYLVKVVPPLDPDFVRWLARDLERIHGFVPNNPRAIKPPEH 272
           GW+   + MG+KPVK++KEE  +K+VPPLD  +VRWLARDLERIHGF P NPRA+KPP+H
Sbjct: 97  GWLTGSLTMGNKPVKEEKEEIFLKIVPPLDRAYVRWLARDLERIHGFTPKNPRAVKPPDH 156

Query: 273 YIQQMRLNGW 302
           YI+ MRLNGW
Sbjct: 157 YIEYMRLNGW 166


>ref|XP_002271152.1| PREDICTED: uncharacterized protein LOC100263775 [Vitis vinifera]
          Length = 77

 Score =  109 bits (273), Expect = 2e-22
 Identities = 46/62 (74%), Positives = 55/62 (88%)
 Frame = +3

Query: 117 MGSKPVKQKKEEYLVKVVPPLDPDFVRWLARDLERIHGFVPNNPRAIKPPEHYIQQMRLN 296
           MG+KPVK++KEE  +K+VPPLD  +VRWLARDLERIHGF P NPRA+KPP+HYI+ MRLN
Sbjct: 1   MGNKPVKEEKEEIFLKIVPPLDRAYVRWLARDLERIHGFTPKNPRAVKPPDHYIEYMRLN 60

Query: 297 GW 302
           GW
Sbjct: 61  GW 62


>ref|XP_004140167.1| PREDICTED: uncharacterized protein LOC101220037 [Cucumis sativus]
           gi|449519842|ref|XP_004166943.1| PREDICTED:
           uncharacterized protein LOC101230218 [Cucumis sativus]
          Length = 76

 Score =  100 bits (249), Expect = 1e-19
 Identities = 46/62 (74%), Positives = 52/62 (83%)
 Frame = +3

Query: 117 MGSKPVKQKKEEYLVKVVPPLDPDFVRWLARDLERIHGFVPNNPRAIKPPEHYIQQMRLN 296
           MG+KPVKQ+ +E  VKV PPLD  FVRWLARDLERIHGF P NPRA+KPP+HYI+ MRL 
Sbjct: 1   MGNKPVKQR-DEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLY 59

Query: 297 GW 302
           GW
Sbjct: 60  GW 61


>ref|XP_002328243.1| predicted protein [Populus trichocarpa] gi|222837758|gb|EEE76123.1|
           predicted protein [Populus trichocarpa]
          Length = 89

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 41/72 (56%), Positives = 54/72 (75%), Gaps = 10/72 (13%)
 Frame = +3

Query: 117 MGSKPVKQKKE----------EYLVKVVPPLDPDFVRWLARDLERIHGFVPNNPRAIKPP 266
           MG+KPVKQ++E          E+L+K+VPP+D  +VRWLARDLERIHGF P N RA+ PP
Sbjct: 1   MGNKPVKQEREAVSPLAPNRPEFLLKIVPPMDHAYVRWLARDLERIHGFTPRNCRAVTPP 60

Query: 267 EHYIQQMRLNGW 302
           +HY++ MR +GW
Sbjct: 61  DHYVEYMRSHGW 72


>ref|XP_002523866.1| conserved hypothetical protein [Ricinus communis]
           gi|223536954|gb|EEF38592.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 81

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 38/64 (59%), Positives = 54/64 (84%), Gaps = 2/64 (3%)
 Frame = +3

Query: 117 MGSKPV--KQKKEEYLVKVVPPLDPDFVRWLARDLERIHGFVPNNPRAIKPPEHYIQQMR 290
           MG+KPV  KQ++EE L+K++PP+D  +++WLARD+E IHG+ P N RA++PP+HYI+ MR
Sbjct: 1   MGNKPVTVKQEREEILLKIIPPVDRAYIQWLARDVEMIHGWTPRNCRAVEPPDHYIEYMR 60

Query: 291 LNGW 302
           LNGW
Sbjct: 61  LNGW 64


Top