BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030264
         (602 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD63139.1| Reverse transcriptase family protein [Asparagus o...    74   3e-11
gb|ABD63162.1| RNase H family protein [Asparagus officinalis]          68   1e-09
gb|AAK92670.1|AC090714_3 putative gag-pol precursor [Oryza sativ...    59   7e-07
gb|EEE59355.1| hypothetical protein OsJ_11444 [Oryza sativa Japo...    59   7e-07
gb|ABN06136.1| RNA-directed DNA polymerase (Reverse transcriptas...    59   7e-07

>gb|ABD63139.1| Reverse transcriptase family protein [Asparagus officinalis]
          Length = 1181

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 41/101 (40%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
 Frame = -1

Query: 602  HR*PPVEKECMSLMFAVLKFRHDLVSHTIYLVLRVNPSKVLVTKAGAPSACLAQ-SMVNP 426
            HR  PVEKEC++L+FAV K RH LV  TIY++ +VNP +VL+TK  + +  LA+ +++  
Sbjct: 1018 HRYNPVEKECLALVFAVQKMRHYLVGQTIYVISKVNPLRVLMTKPSSLNCRLAKWAILLS 1077

Query: 425  AFPILYCLCPRPSLKDKLWADFLTVHPLLPYSPLNDDHPNE 303
             + + +   P+ ++K +  ADFL  HP+   S L ++ P+E
Sbjct: 1078 QYDMQF--MPQKAVKGQALADFLADHPVTGTSKLYEELPDE 1116


>gb|ABD63162.1| RNase H family protein [Asparagus officinalis]
          Length = 1189

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 38/100 (38%), Positives = 63/100 (63%)
 Frame = -1

Query: 602 HR*PPVEKECMSLMFAVLKFRHDLVSHTIYLVLRVNPSKVLVTKAGAPSACLAQSMVNPA 423
           HR  PVEK+C++L+FA+ K RH LV  TI ++ +VNP +VL+TK  + +  LA+  +  +
Sbjct: 514 HRYNPVEKKCLALVFAIQKIRHYLVGQTIQVISKVNPLRVLMTKPSSLNCRLAKWAILLS 573

Query: 422 FPILYCLCPRPSLKDKLWADFLTVHPLLPYSPLNDDHPNE 303
              +  + P+ ++K +  ADFL  HP+   S L ++ P+E
Sbjct: 574 HYDMQFM-PQKAVKGQALADFLADHPVSGASKLYEELPDE 612


>gb|AAK92670.1|AC090714_3 putative gag-pol precursor [Oryza sativa Japonica Group]
          Length = 1262

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 31/101 (30%), Positives = 58/101 (57%)
 Frame = -1

Query: 590 PVEKECMSLMFAVLKFRHDLVSHTIYLVLRVNPSKVLVTKAGAPSACLAQSMVNPAFPIL 411
           P+EK C++L+FA+ K RH +++H I L+  V+P + ++++          +++   F I 
Sbjct: 632 PIEKLCLALIFALKKLRHYMLTHQIQLIATVDPIRYVLSQPLLAGRLGKWALLMMEFDIT 691

Query: 410 YCLCPRPSLKDKLWADFLTVHPLLPYSPLNDDHPNESVMQV 288
           Y   P+ ++K +  A+FL  HP+   SPL  + P+E V  +
Sbjct: 692 Y--VPQKAVKGQALAEFLAAHPVPDDSPLITELPDEDVFTI 730


>gb|EEE59355.1| hypothetical protein OsJ_11444 [Oryza sativa Japonica Group]
          Length = 350

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 31/101 (30%), Positives = 58/101 (57%)
 Frame = -1

Query: 590 PVEKECMSLMFAVLKFRHDLVSHTIYLVLRVNPSKVLVTKAGAPSACLAQSMVNPAFPIL 411
           P+EK C++L+FA+ K RH +++H I L+  V+P + ++++          +++   F I 
Sbjct: 10  PIEKLCLALIFALKKLRHYMLTHQIQLIATVDPIRYVLSQPLLAGRLGKWALLMMEFDIT 69

Query: 410 YCLCPRPSLKDKLWADFLTVHPLLPYSPLNDDHPNESVMQV 288
           Y   P+ ++K +  A+FL  HP+   SPL  + P+E V  +
Sbjct: 70  Y--VPQKAVKGQALAEFLAAHPVPDDSPLITELPDEDVFTI 108


>gb|ABN06136.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 1146

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 31/98 (31%), Positives = 52/98 (53%)
 Frame = -1

Query: 587 VEKECMSLMFAVLKFRHDLVSHTIYLVLRVNPSKVLVTKAGAPSACLAQSMVNPAFPILY 408
           +EK C +L +A  + RH LV+HT +L+ R++P K +  KA          M+   + I++
Sbjct: 472 LEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVF 531

Query: 407 CLCPRPSLKDKLWADFLTVHPLLPYSPLNDDHPNESVM 294
               + ++K  + AD L   PL  Y P+  D P+E +M
Sbjct: 532 --KTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIM 567