BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030260
         (616 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-...    92   8e-29
emb|CBI37137.3| unnamed protein product [Vitis vinifera]               92   8e-29
emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera]    90   2e-25
ref|XP_002307656.1| chromatin remodeling complex subunit [Populu...    72   8e-20
ref|XP_004151991.1| PREDICTED: DNA repair protein rhp26-like [Cu...    69   1e-19

>ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
          Length = 1227

 Score = 92.0 bits (227), Expect(2) = 8e-29
 Identities = 52/87 (59%), Positives = 61/87 (70%)
 Frame = -2

Query: 264 SRVKLQSKLRAVEVEIDAVAASFEQASSRVENEEYFSGSIDNGEQEGKEDDKNDIRNATN 85
           S+ KL SKLRA+EVEIDAVA + +QA +   NE + S   DN  Q   EDDK  I+ + N
Sbjct: 62  SQAKLYSKLRALEVEIDAVAYTVQQARNTERNENHVSHGNDNRAQGDAEDDKLVIQASPN 121

Query: 84  NLNLQHALAKDRLRSLKKTKVQLQNEL 4
           NL LQHALA DRLRSLKKTK QL+ EL
Sbjct: 122 NLTLQHALAADRLRSLKKTKAQLEIEL 148



 Score = 60.8 bits (146), Expect(2) = 8e-29
 Identities = 32/52 (61%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
 Frame = -1

Query: 490 EEEDRILFSGLGVTSANPEDIERNVLAEAKDKV---GEAGGSIEEQLLDNEK 344
           EEEDRIL S LGVTSANPED+ER +LA A ++     EAG S EE+ LD  K
Sbjct: 3   EEEDRILLSSLGVTSANPEDVEREILAAATNEAENGSEAGRSTEEEFLDKSK 54


>emb|CBI37137.3| unnamed protein product [Vitis vinifera]
          Length = 1116

 Score = 92.0 bits (227), Expect(2) = 8e-29
 Identities = 52/87 (59%), Positives = 61/87 (70%)
 Frame = -2

Query: 264 SRVKLQSKLRAVEVEIDAVAASFEQASSRVENEEYFSGSIDNGEQEGKEDDKNDIRNATN 85
           S+ KL SKLRA+EVEIDAVA + +QA +   NE + S   DN  Q   EDDK  I+ + N
Sbjct: 62  SQAKLYSKLRALEVEIDAVAYTVQQARNTERNENHVSHGNDNRAQGDAEDDKLVIQASPN 121

Query: 84  NLNLQHALAKDRLRSLKKTKVQLQNEL 4
           NL LQHALA DRLRSLKKTK QL+ EL
Sbjct: 122 NLTLQHALAADRLRSLKKTKAQLEIEL 148



 Score = 60.8 bits (146), Expect(2) = 8e-29
 Identities = 32/52 (61%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
 Frame = -1

Query: 490 EEEDRILFSGLGVTSANPEDIERNVLAEAKDKV---GEAGGSIEEQLLDNEK 344
           EEEDRIL S LGVTSANPED+ER +LA A ++     EAG S EE+ LD  K
Sbjct: 3   EEEDRILLSSLGVTSANPEDVEREILAAATNEAENGSEAGRSTEEEFLDKSK 54


>emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera]
          Length = 1249

 Score = 89.7 bits (221), Expect(2) = 2e-25
 Identities = 51/87 (58%), Positives = 60/87 (68%)
 Frame = -2

Query: 264 SRVKLQSKLRAVEVEIDAVAASFEQASSRVENEEYFSGSIDNGEQEGKEDDKNDIRNATN 85
           S+ KL SKL A+EVEIDAVA + +QA +   NE + S   DN  Q   EDDK  I+ + N
Sbjct: 84  SQAKLYSKLXALEVEIDAVAYTVQQARNTERNENHVSHGNDNRAQGDAEDDKLVIQASPN 143

Query: 84  NLNLQHALAKDRLRSLKKTKVQLQNEL 4
           NL LQHALA DRLRSLKKTK QL+ EL
Sbjct: 144 NLTLQHALAADRLRSLKKTKAQLEIEL 170



 Score = 51.6 bits (122), Expect(2) = 2e-25
 Identities = 32/74 (43%), Positives = 36/74 (48%), Gaps = 25/74 (33%)
 Frame = -1

Query: 490 EEEDRILFSGLGVTSANPEDIERNVLAEAKDKV-------------------------GE 386
           EEEDRIL S LGVTSANPED+ER +LA   D +                          E
Sbjct: 3   EEEDRILLSSLGVTSANPEDVEREILAAYIDHIVPLGCRSVRVSFSNEPEATNEAENGSE 62

Query: 385 AGGSIEEQLLDNEK 344
           AG S EE+ LD  K
Sbjct: 63  AGRSTEEEFLDKSK 76


>ref|XP_002307656.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222857105|gb|EEE94652.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 1206

 Score = 71.6 bits (174), Expect(2) = 8e-20
 Identities = 39/88 (44%), Positives = 58/88 (65%)
 Frame = -2

Query: 264 SRVKLQSKLRAVEVEIDAVAASFEQASSRVENEEYFSGSIDNGEQEGKEDDKNDIRNATN 85
           ++ KL SKLRAV+ EIDAVA++ E+ +  V  E          ++  K DD++ ++ + +
Sbjct: 58  NQAKLYSKLRAVKFEIDAVASTVEEVTDVVSGEHQTYDDGGGTKKRDKGDDESGVQVSPD 117

Query: 84  NLNLQHALAKDRLRSLKKTKVQLQNELL 1
           +  LQ ALA DRLRSLK+TKV+L+ ELL
Sbjct: 118 DFTLQQALAADRLRSLKRTKVKLEKELL 145



 Score = 50.8 bits (120), Expect(2) = 8e-20
 Identities = 26/42 (61%), Positives = 32/42 (76%)
 Frame = -1

Query: 487 EEDRILFSGLGVTSANPEDIERNVLAEAKDKVGEAGGSIEEQ 362
           +ED +L S LGVTSANPEDIER VL EA++   + GGS EE+
Sbjct: 4   DEDSVLLSSLGVTSANPEDIERVVLEEARNN-ADKGGSTEEE 44


>ref|XP_004151991.1| PREDICTED: DNA repair protein rhp26-like [Cucumis sativus]
           gi|449522123|ref|XP_004168077.1| PREDICTED: DNA repair
           protein rhp26-like [Cucumis sativus]
          Length = 1221

 Score = 68.6 bits (166), Expect(2) = 1e-19
 Identities = 42/87 (48%), Positives = 54/87 (62%)
 Frame = -2

Query: 264 SRVKLQSKLRAVEVEIDAVAASFEQASSRVENEEYFSGSIDNGEQEGKEDDKNDIRNATN 85
           S V+L  KLRAVE EIDAVA++ E       NE++   S D+ +   +ED       + +
Sbjct: 62  SHVQLYQKLRAVEYEIDAVASTVEPGEKLERNEQHSCVSTDSQKHAREEDSV-----SAS 116

Query: 84  NLNLQHALAKDRLRSLKKTKVQLQNEL 4
              LQHALA DRLRSLKKT+ QL+NEL
Sbjct: 117 GDGLQHALAVDRLRSLKKTQHQLKNEL 143



 Score = 53.1 bits (126), Expect(2) = 1e-19
 Identities = 30/50 (60%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
 Frame = -1

Query: 493 EEEEDRILFSGLGVTSANPEDIERNVLAEAKDKVG---EAGGSIEEQLLD 353
           EE EDRI  + LGVTSANPEDIER++L EAK K     E GG  EE + D
Sbjct: 2   EEVEDRIFLNSLGVTSANPEDIERDLLNEAKKKSENGVEVGGIEEENVCD 51