BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030257
         (479 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17436.3| unnamed protein product [Vitis vinifera]              171   7e-41
ref|XP_002274814.1| PREDICTED: CDK5RAP1-like protein-like [Vitis...   171   7e-41
dbj|BAD15110.2| similar to CDK5 regulatory subunit-associated pr...   150   8e-35
ref|XP_002867018.1| radical SAM domain-containing protein [Arabi...   142   2e-32
ref|NP_195357.2| Methylthiotransferase [Arabidopsis thaliana] gi...   139   2e-31

>emb|CBI17436.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  171 bits (432), Expect = 7e-41
 Identities = 97/164 (59%), Positives = 117/164 (71%), Gaps = 6/164 (3%)
 Frame = +2

Query: 5   MASSVSSLSHLLNQPHSPSLFAKLTKCCCLNLCFTSNRIHFPSSP-SLRS---HRLASSL 172
           MAS +SSLS +L+QPH  ++  +L   CC  L   S + H  SS  +LR+    R   SL
Sbjct: 72  MASPLSSLSSILSQPHC-AIRIRLPTRCCFGLQSLSPKPHLSSSRCNLRTPPPFRPGFSL 130

Query: 173 NATRNFSQSHS--PFFNKTDVPSLRDFMSKAVSTSETQQVDPVSASEVLSKGRIYHETYG 346
             +R FSQSHS  P  NK++VPSL  F+++A   +   Q DPVSASE+L +GRIYHETYG
Sbjct: 131 TFSRKFSQSHSHLPLSNKSEVPSLHSFIAQAAVATSEVQPDPVSASEILPRGRIYHETYG 190

Query: 347 CQMNINDMEIVLSIMKNAGYCEVAEVPENAEIIFINTCAIRDNA 478
           CQMNINDMEIVLSIMK AGY EV EVPE+AE+IFINTCAIRDNA
Sbjct: 191 CQMNINDMEIVLSIMKKAGYNEVVEVPESAEVIFINTCAIRDNA 234


>ref|XP_002274814.1| PREDICTED: CDK5RAP1-like protein-like [Vitis vinifera]
          Length = 626

 Score =  171 bits (432), Expect = 7e-41
 Identities = 97/164 (59%), Positives = 117/164 (71%), Gaps = 6/164 (3%)
 Frame = +2

Query: 5   MASSVSSLSHLLNQPHSPSLFAKLTKCCCLNLCFTSNRIHFPSSP-SLRS---HRLASSL 172
           MAS +SSLS +L+QPH  ++  +L   CC  L   S + H  SS  +LR+    R   SL
Sbjct: 1   MASPLSSLSSILSQPHC-AIRIRLPTRCCFGLQSLSPKPHLSSSRCNLRTPPPFRPGFSL 59

Query: 173 NATRNFSQSHS--PFFNKTDVPSLRDFMSKAVSTSETQQVDPVSASEVLSKGRIYHETYG 346
             +R FSQSHS  P  NK++VPSL  F+++A   +   Q DPVSASE+L +GRIYHETYG
Sbjct: 60  TFSRKFSQSHSHLPLSNKSEVPSLHSFIAQAAVATSEVQPDPVSASEILPRGRIYHETYG 119

Query: 347 CQMNINDMEIVLSIMKNAGYCEVAEVPENAEIIFINTCAIRDNA 478
           CQMNINDMEIVLSIMK AGY EV EVPE+AE+IFINTCAIRDNA
Sbjct: 120 CQMNINDMEIVLSIMKKAGYNEVVEVPESAEVIFINTCAIRDNA 163


>dbj|BAD15110.2| similar to CDK5 regulatory subunit-associated protein [Nicotiana
           tabacum]
          Length = 623

 Score =  150 bits (380), Expect = 8e-35
 Identities = 91/168 (54%), Positives = 114/168 (67%), Gaps = 10/168 (5%)
 Frame = +2

Query: 5   MASSVSSLSHLLNQPHSPSLFAKLTKCCCLNLCFTSNRIHFPSSPSLRS-----HRLASS 169
           MASS+SSLS +L+QPH  ++  K  K   +    +S  +   S+ S R+          S
Sbjct: 1   MASSLSSLSTMLSQPHC-AVRIKFPKQYSVRF-LSSKLLEVQSTSSRRTSVSLGRSSTFS 58

Query: 170 LNATRNFSQSHS--PFFNKTDVPSLRDFMSKA---VSTSETQQVDPVSASEVLSKGRIYH 334
           +  +RNFSQ HS     +K  +P+LRDF+ KA   VS+S+ QQ + V  S+V+ +GRIYH
Sbjct: 59  IKISRNFSQCHSRTSLTSKNQIPTLRDFIPKATQTVSSSDVQQ-ESVMISDVMPRGRIYH 117

Query: 335 ETYGCQMNINDMEIVLSIMKNAGYCEVAEVPENAEIIFINTCAIRDNA 478
           ETYGCQMN+NDMEIVLSIMKNAGY E  EVPENAEIIFINTCAIRDNA
Sbjct: 118 ETYGCQMNVNDMEIVLSIMKNAGYTESVEVPENAEIIFINTCAIRDNA 165


>ref|XP_002867018.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
           lyrata] gi|297312854|gb|EFH43277.1| radical SAM
           domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 636

 Score =  142 bits (359), Expect = 2e-32
 Identities = 90/177 (50%), Positives = 111/177 (62%), Gaps = 20/177 (11%)
 Frame = +2

Query: 8   ASSVSSLSHLLNQPHSPSLFAKLTKCCCLNLCFTSNRI--HFPSS---PSLRSHRLAS-- 166
           +SS+SSLS +L+ PH  SL  K +   C  L F S+++  H  SS   P  RS  L +  
Sbjct: 3   SSSLSSLSSILSNPHGCSLCFKASTRRCFALTFLSSKVVTHASSSALLPRCRSTHLLTQK 62

Query: 167 --------SLNATRNFSQSHSPFFNKTDVPSLRDFMSKA-----VSTSETQQVDPVSASE 307
                   +LN +R+FS S      K D PSL  F+S A     ++T ET+    +  S+
Sbjct: 63  PINRKNGFALNLSRSFSVSQIAGSGKFDGPSLHQFVSNAQAHASLTTPETESESTLD-SD 121

Query: 308 VLSKGRIYHETYGCQMNINDMEIVLSIMKNAGYCEVAEVPENAEIIFINTCAIRDNA 478
           V SKGRIYHETYGCQMNINDMEIVLSIMKN+GY EV   PE+AE+IFINTCAIRDNA
Sbjct: 122 VASKGRIYHETYGCQMNINDMEIVLSIMKNSGYKEVVTDPESAEVIFINTCAIRDNA 178


>ref|NP_195357.2| Methylthiotransferase [Arabidopsis thaliana]
           gi|32129440|sp|Q8H0V1.1|CK5P1_ARATH RecName:
           Full=CDK5RAP1-like protein gi|25083016|gb|AAN72033.1|
           putative protein [Arabidopsis thaliana]
           gi|30725464|gb|AAP37754.1| At4g36390 [Arabidopsis
           thaliana] gi|332661250|gb|AEE86650.1|
           Methylthiotransferase [Arabidopsis thaliana]
          Length = 640

 Score =  139 bits (350), Expect = 2e-31
 Identities = 88/180 (48%), Positives = 110/180 (61%), Gaps = 23/180 (12%)
 Frame = +2

Query: 8   ASSVSSLSHLLNQPHSPSLFAKLTKCCCLNLCFTSNRIHFPSS-------PSLRS--HRL 160
           +SS+SSLS +L+ PH  SL  K +   C  L F S++    SS       P  RS  HRL
Sbjct: 3   SSSLSSLSSILSNPHGCSLCFKASTQRCFALRFLSSKATHASSSSSSALLPRCRSSTHRL 62

Query: 161 AS---------SLNATRNFSQSHSPFFNKTDVPSLRDFMSKA-----VSTSETQQVDPVS 298
                      SLN +R+FS S      K D PSL  F+S A     ++T ET+    + 
Sbjct: 63  TQKPINRKKGFSLNLSRSFSISQIASSGKFDGPSLHQFVSNAQAHASLTTPETESESTLD 122

Query: 299 ASEVLSKGRIYHETYGCQMNINDMEIVLSIMKNAGYCEVAEVPENAEIIFINTCAIRDNA 478
            S++ SKGRIYHETYGCQMNINDMEIVL+IMKN+GY EV   PE+AE+IF+NTCAIR+NA
Sbjct: 123 -SDIASKGRIYHETYGCQMNINDMEIVLAIMKNSGYKEVVTDPESAEVIFVNTCAIRENA 181