BLASTX nr result

ID: Coptis23_contig00030254 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030254
         (478 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278446.1| PREDICTED: uncharacterized protein LOC100241...   100   2e-19
ref|XP_002511891.1| hypothetical protein RCOM_1616170 [Ricinus c...    93   2e-17
ref|XP_002320812.1| predicted protein [Populus trichocarpa] gi|2...    90   2e-16
ref|XP_002302596.1| predicted protein [Populus trichocarpa] gi|2...    88   6e-16
ref|XP_002464552.1| hypothetical protein SORBIDRAFT_01g020500 [S...    75   7e-12

>ref|XP_002278446.1| PREDICTED: uncharacterized protein LOC100241428 [Vitis vinifera]
           gi|297745355|emb|CBI40435.3| unnamed protein product
           [Vitis vinifera]
          Length = 291

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 54/140 (38%), Positives = 76/140 (54%), Gaps = 3/140 (2%)
 Frame = +1

Query: 7   EEKRIGVCNKTDGKGWYCKKEAKEGNPLCEHHLIQLKSYNYSDYTHSRGKSSQVKPPVGA 186
           + K I  CNK+DGKGW C+K AKEG+ LCEHHL QL+SYN S+ + SR        P   
Sbjct: 125 KNKTILFCNKSDGKGWQCRKAAKEGHALCEHHLAQLRSYNSSNQSSSRKLDKPADRP--- 181

Query: 187 TTTTTIAANKRRNRG-RVSSASPSEFYYYSGFGPSWSKKR--SKKGNEIKVIKDVEMEAV 357
                  + +RR RG +   ++P+E+YYYSGFGP W KKR  SK  +    +K     + 
Sbjct: 182 -------SVRRRGRGLKKPPSNPNEYYYYSGFGPLWGKKRGGSKPESNRNELKTESPPSY 234

Query: 358 DSDTNAEASSSSMVHVANYH 417
            S  ++       +   ++H
Sbjct: 235 SSQIDSPDDPDQKIEEEHHH 254


>ref|XP_002511891.1| hypothetical protein RCOM_1616170 [Ricinus communis]
           gi|223549071|gb|EEF50560.1| hypothetical protein
           RCOM_1616170 [Ricinus communis]
          Length = 311

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 5/106 (4%)
 Frame = +1

Query: 13  KRIGVCNKTDGKGWYCKKEAKEGNPLCEHHLIQLKSYNYSDYTHSR-----GKSSQVKPP 177
           ++I  CNK DGK W+CK E KEG+ +C+HH++     +Y++   S        S  +K P
Sbjct: 133 EKIYCCNKIDGKEWHCKNELKEGHSMCDHHILSSLKSSYNNNVTSACIASPTNSPSIKKP 192

Query: 178 VGATTTTTIAANKRRNRGRVSSASPSEFYYYSGFGPSWSKKRSKKG 315
             A   T     K   +G+ SS++P EFYYYSGFGP W K+R  +G
Sbjct: 193 EKAVAGTRRGRGKGAKKGQSSSSNPYEFYYYSGFGPLWGKRRGDRG 238


>ref|XP_002320812.1| predicted protein [Populus trichocarpa] gi|222861585|gb|EEE99127.1|
           predicted protein [Populus trichocarpa]
          Length = 301

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 50/123 (40%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
 Frame = +1

Query: 4   EEEKRIGVCNKTDGKGWYCKKEAKEGNPLCE--HHLIQLKSYNYSDYTHSRGKSSQVKPP 177
           + E ++  CNKTDGKGW+CK + K G+ +C+  HHL   KS +YS+  ++   S+  K P
Sbjct: 125 DSEFKLKKCNKTDGKGWHCKNDTKNGHTVCDHHHHLTSHKS-SYSNINNNINGSAATKKP 183

Query: 178 --VGATTTTTIAANKRRNRGRVSSASPSEFYYYSGFGPSWSKKRSKKGNEIK-VIKDVEM 348
             V +         K   +G  SS++P EFYYYSGFGP W K+R  K    K   KDV+ 
Sbjct: 184 DKVASIIGARRGRAKSAKKGSSSSSNPYEFYYYSGFGPLWGKRRGDKDTVNKNEAKDVDN 243

Query: 349 EAV 357
             V
Sbjct: 244 STV 246


>ref|XP_002302596.1| predicted protein [Populus trichocarpa] gi|222844322|gb|EEE81869.1|
           predicted protein [Populus trichocarpa]
          Length = 304

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 49/137 (35%), Positives = 72/137 (52%), Gaps = 8/137 (5%)
 Frame = +1

Query: 4   EEEKRIGVCNKTDGKGWYCKKEAKEGNPLCE--HHLIQLKSYNYSDYTHSRGKSSQVKPP 177
           + E  +  CNKTDGKGW+CK E + G P+C+  HHL  LKS + ++   +    +  KP 
Sbjct: 124 DSEFELKNCNKTDGKGWHCKNETRNGLPMCDHHHHLTSLKSSSCNNGNINGSAIATKKPD 183

Query: 178 VGATTTTTIAAN-KRRNRGRVSSASPSEFYYYSGFGPSWSKKRS-----KKGNEIKVIKD 339
            G   T       K   +G  S+++P EFYYYSGFGP W K+R       K  +  V   
Sbjct: 184 KGTCITGARRGRAKSAKKGSSSNSNPYEFYYYSGFGPLWGKRRGDRDAVNKNEDKDVDNG 243

Query: 340 VEMEAVDSDTNAEASSS 390
             ++++  +T   +SSS
Sbjct: 244 TIIDSMTQNTTPFSSSS 260


>ref|XP_002464552.1| hypothetical protein SORBIDRAFT_01g020500 [Sorghum bicolor]
           gi|241918406|gb|EER91550.1| hypothetical protein
           SORBIDRAFT_01g020500 [Sorghum bicolor]
          Length = 405

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 43/140 (30%), Positives = 76/140 (54%), Gaps = 12/140 (8%)
 Frame = +1

Query: 1   QEEEKRIGVCNKTDGKGWYCKKEAKEGNPLCEHHLIQLKSYNYSDYT-HSRGKSSQVKP- 174
           Q+   R+ +C K DG+ W+C +   + + LCE+HL+Q +SY   D+   S  +S + KP 
Sbjct: 173 QDGAARVWMCKKNDGRRWHCNRPVSQPDSLCEYHLVQKRSYLNPDFEFQSVAESEKPKPK 232

Query: 175 ------PV---GATTTTTIAANKRRNRGRVSSASPSE-FYYYSGFGPSWSKKRSKKGNEI 324
                 PV    A+ ++T +  +++ +  V+  S +E FYYY+GFGP  SK++ + G   
Sbjct: 233 PKPALAPVQAAAASKSSTSSKPRKKKKKPVNDCSATEGFYYYAGFGPFRSKRQCRSGGMN 292

Query: 325 KVIKDVEMEAVDSDTNAEAS 384
           + +   + E    +T  +AS
Sbjct: 293 EPLPAKQEEEEKEETPEDAS 312


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