BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030230
         (486 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptas...    99   8e-25
gb|EEC84982.1| hypothetical protein OsI_32248 [Oryza sativa Indi...   103   1e-24
gb|AAK52166.1|AC084831_20 putative reverse transcriptase [Oryza ...    96   1e-23
gb|ABF97084.1| retrotransposon protein, putative, unclassified [...    96   1e-23
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...    94   5e-23

>gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 653

 Score = 99.4 bits (246), Expect(2) = 8e-25
 Identities = 54/121 (44%), Positives = 75/121 (61%)
 Frame = +3

Query: 108 KDLLDSYCAFSGQSINNQKSSLIFSHNLPGRTKKLISDVLNIPISSRESKYLGIPTNPSK 287
           KD+LD+Y   S Q IN QKS + FS N+P   K  +S++L +       KYLG+P+   +
Sbjct: 292 KDILDTYANASDQLINMQKSEIYFSRNVPVTKKNTLSNMLWVSEGIGIRKYLGLPSMIGR 351

Query: 288 PSKLSFNHIIDRVSSKIEGWHSKCLSQAGKLTLIKSVSSAIPTFSMSTFLLSKDMCDRVR 467
             K  FN+I DR+ ++I G  SK LSQAGK  LIKSV+ AIP++ MS FLL   + D + 
Sbjct: 352 SKKSIFNYIKDRIWNRISGLSSKMLSQAGKEVLIKSVAQAIPSYCMSVFLLPHSIADDIE 411

Query: 468 Q 470
           +
Sbjct: 412 K 412



 Score = 39.3 bits (90), Expect(2) = 8e-25
 Identities = 18/27 (66%), Positives = 21/27 (77%)
 Frame = +1

Query: 31  PPVSHLLFADDSLVFFRANLSEASHVK 111
           P VSHLLFADDS +FFRAN +E   +K
Sbjct: 266 PTVSHLLFADDSFLFFRANENETRALK 292


>gb|EEC84982.1| hypothetical protein OsI_32248 [Oryza sativa Indica Group]
           gi|222630794|gb|EEE62926.1| hypothetical protein
           OsJ_17731 [Oryza sativa Japonica Group]
          Length = 893

 Score =  103 bits (257), Expect(2) = 1e-24
 Identities = 50/119 (42%), Positives = 79/119 (66%)
 Frame = +3

Query: 108 KDLLDSYCAFSGQSINNQKSSLIFSHNLPGRTKKLISDVLNIPISSRESKYLGIPTNPSK 287
           +++L+ Y + SGQ +N  KSS++FS N     +K++ ++L+I   +R  KYLG+P    +
Sbjct: 375 QNVLNLYESCSGQIVNKDKSSIMFSKNTSQADRKMVMEILDISTEARNEKYLGLPVYMGR 434

Query: 288 PSKLSFNHIIDRVSSKIEGWHSKCLSQAGKLTLIKSVSSAIPTFSMSTFLLSKDMCDRV 464
               +F ++ +RV  KI+GW  K LS+AGK  LIK+V+ AIPTF+MS F L+K +CD +
Sbjct: 435 SRAKTFAYLKERVWKKIQGWKEKLLSKAGKDILIKAVAQAIPTFAMSCFDLTKTLCDEI 493



 Score = 34.3 bits (77), Expect(2) = 1e-24
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +1

Query: 25  EVPPVSHLLFADDSLVFFRAN 87
           + P VSHLLFADDSL+ F+ N
Sbjct: 347 QAPSVSHLLFADDSLLLFKVN 367


>gb|AAK52166.1|AC084831_20 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1185

 Score = 95.5 bits (236), Expect(2) = 1e-23
 Identities = 50/121 (41%), Positives = 68/121 (56%)
 Frame = +3

Query: 108 KDLLDSYCAFSGQSINNQKSSLIFSHNLPGRTKKLISDVLNIPISSRESKYLGIPTNPSK 287
           K +LD YC  SGQ I+  KSS+ FS N     K  +   L+I   +   KYLG+P     
Sbjct: 518 KAILDIYCQNSGQKISEAKSSIFFSRNTAVEDKAAVCGSLDIMTEALNDKYLGLPAMIGV 577

Query: 288 PSKLSFNHIIDRVSSKIEGWHSKCLSQAGKLTLIKSVSSAIPTFSMSTFLLSKDMCDRVR 467
                F H+IDRV+++I G   K LS  GK  LIKS++ AIP F+MS F + K +CD + 
Sbjct: 578 DKSDCFRHLIDRVNNRINGRKEKMLSTGGKEVLIKSIAQAIPVFAMSVFRIPKKICDCIS 637

Query: 468 Q 470
           +
Sbjct: 638 E 638



 Score = 38.9 bits (89), Expect(2) = 1e-23
 Identities = 16/29 (55%), Positives = 22/29 (75%)
 Frame = +1

Query: 25  EVPPVSHLLFADDSLVFFRANLSEASHVK 111
           E P +SHLLFADDSL+  +A+ + A H+K
Sbjct: 490 EAPMISHLLFADDSLILMQADKNNADHLK 518


>gb|ABF97084.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1184

 Score = 95.5 bits (236), Expect(2) = 1e-23
 Identities = 50/121 (41%), Positives = 68/121 (56%)
 Frame = +3

Query: 108 KDLLDSYCAFSGQSINNQKSSLIFSHNLPGRTKKLISDVLNIPISSRESKYLGIPTNPSK 287
           K +LD YC  SGQ I+  KSS+ FS N     K  +   L+I   +   KYLG+P     
Sbjct: 518 KAILDIYCQNSGQKISEAKSSIFFSRNTAVEDKAAVCGSLDIMTEALNDKYLGLPAMIGV 577

Query: 288 PSKLSFNHIIDRVSSKIEGWHSKCLSQAGKLTLIKSVSSAIPTFSMSTFLLSKDMCDRVR 467
                F H+IDRV+++I G   K LS  GK  LIKS++ AIP F+MS F + K +CD + 
Sbjct: 578 DKSDCFRHLIDRVNNRINGRKEKMLSTGGKEVLIKSIAQAIPVFAMSVFRIPKKICDCIS 637

Query: 468 Q 470
           +
Sbjct: 638 E 638



 Score = 38.9 bits (89), Expect(2) = 1e-23
 Identities = 16/29 (55%), Positives = 22/29 (75%)
 Frame = +1

Query: 25  EVPPVSHLLFADDSLVFFRANLSEASHVK 111
           E P +SHLLFADDSL+  +A+ + A H+K
Sbjct: 490 EAPMISHLLFADDSLILMQADKNNADHLK 518


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score = 94.0 bits (232), Expect(2) = 5e-23
 Identities = 46/117 (39%), Positives = 72/117 (61%)
 Frame = +3

Query: 114  LLDSYCAFSGQSINNQKSSLIFSHNLPGRTKKLISDVLNIPISSRESKYLGIPTNPSKPS 293
            +L  Y   SGQ IN  KS+++FS N     K+ +   LN+   +   +YLG+P    +  
Sbjct: 958  ILQIYEECSGQVINKDKSAVMFSPNTSSLEKRAVMAALNMQRETTNERYLGLPVFVGRSR 1017

Query: 294  KLSFNHIIDRVSSKIEGWHSKCLSQAGKLTLIKSVSSAIPTFSMSTFLLSKDMCDRV 464
               F+++ +R+  +I+GW  K LS+AGK  LIK+V+ AIPTF+M  F L+KD+CD++
Sbjct: 1018 TKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCFELTKDLCDQI 1074



 Score = 38.5 bits (88), Expect(2) = 5e-23
 Identities = 18/28 (64%), Positives = 21/28 (75%)
 Frame = +1

Query: 31   PPVSHLLFADDSLVFFRANLSEASHVKT 114
            P VSHLLFADDSL+  RAN  EA  ++T
Sbjct: 930  PSVSHLLFADDSLILCRANGGEAQQLQT 957