BLASTX nr result

ID: Coptis23_contig00030216 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030216
         (526 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004152536.1| PREDICTED: uncharacterized protein LOC101218...   143   2e-32
ref|XP_002330117.1| predicted protein [Populus trichocarpa] gi|2...   142   2e-32
ref|XP_003550771.1| PREDICTED: uncharacterized protein LOC100804...   139   2e-31
ref|XP_003524936.1| PREDICTED: uncharacterized protein LOC100775...   139   2e-31
ref|XP_003609011.1| YLP motif-containing protein [Medicago trunc...   136   2e-30

>ref|XP_004152536.1| PREDICTED: uncharacterized protein LOC101218580 [Cucumis sativus]
           gi|449516842|ref|XP_004165455.1| PREDICTED:
           uncharacterized LOC101218580 [Cucumis sativus]
          Length = 884

 Score =  143 bits (360), Expect = 2e-32
 Identities = 77/147 (52%), Positives = 95/147 (64%), Gaps = 10/147 (6%)
 Frame = -3

Query: 413 SPPQPTSSLYTIPVTTTDAAPL------LHPSAR----EGQPFKLKSISPDRPKIIDASS 264
           S P+  S  +  P+    ++P+      LHP ++    +G+PF L  + P +PK+IDAS 
Sbjct: 428 SAPEHRSFHHHKPMPHVSSSPMMEDSLALHPYSKKFAADGKPFGLNQLPPQKPKVIDASQ 487

Query: 263 LFKRPNRDTRPDHIVIILRGLPGSGKSYLAKMLRDLEVENGGNAPRIHSMDDYFMTXXXX 84
           LFK P+R TRPDHIV+ILRGLPGSGKSYLAKMLRD+EVENGG+APRIHSMDDYFMT    
Sbjct: 488 LFKPPHRSTRPDHIVVILRGLPGSGKSYLAKMLRDVEVENGGDAPRIHSMDDYFMTEVEK 547

Query: 83  XXXXXXXXXXXXXXXXKRVTKKVMEYC 3
                             +TKKVMEYC
Sbjct: 548 VDEVDAKSSNSIKGKKP-ITKKVMEYC 573


>ref|XP_002330117.1| predicted protein [Populus trichocarpa] gi|222871251|gb|EEF08382.1|
           predicted protein [Populus trichocarpa]
          Length = 648

 Score =  142 bits (359), Expect = 2e-32
 Identities = 76/148 (51%), Positives = 94/148 (63%), Gaps = 11/148 (7%)
 Frame = -3

Query: 413 SPPQPTSSLYTIPVTTTDAAPLLHPSAR----------EGQPFKLKSISPDRPKIIDASS 264
           SPP+ +S+L+ +P+ +    P LH ++            G+ F  K +SP+RP ++DAS 
Sbjct: 201 SPPKSSSALFPVPINSAATNPYLHNNSSGFVSEEWKQSSGKTFLHKKLSPERPIVVDASH 260

Query: 263 LFKRPNRDTRPDHIVIILRGLPGSGKSYLAKMLRDLEVENGGNAPRIHSMDDYFMTXXXX 84
           LFK P+R TRP+HIVIILRGLPGSGKSYLAK +RDLEVENGGN PRIHSMDDYFMT    
Sbjct: 261 LFKMPHRATRPNHIVIILRGLPGSGKSYLAKTMRDLEVENGGNVPRIHSMDDYFMTEVEK 320

Query: 83  XXXXXXXXXXXXXXXXKRVTKK-VMEYC 3
                           K + KK VMEYC
Sbjct: 321 VEDGDASKSSSSTRGKKPIVKKVVMEYC 348


>ref|XP_003550771.1| PREDICTED: uncharacterized protein LOC100804293 [Glycine max]
          Length = 633

 Score =  139 bits (351), Expect = 2e-31
 Identities = 77/151 (50%), Positives = 92/151 (60%), Gaps = 12/151 (7%)
 Frame = -3

Query: 419 RVSPPQPTSSLYTIPVTTTDAAPLLHPSA------------REGQPFKLKSISPDRPKII 276
           ++ PP    SL+ +  +   + P  HPSA             + Q F L  ++ +RPK+I
Sbjct: 187 QLKPP----SLFPVAESQPMSQPYYHPSAFPSEEASKQQYLGDSQSFSLNQLAAERPKVI 242

Query: 275 DASSLFKRPNRDTRPDHIVIILRGLPGSGKSYLAKMLRDLEVENGGNAPRIHSMDDYFMT 96
           DAS LF+ P+R +RPDH VII RGLPGSGKSYLAKMLRDLEVENGG+APRIHSMDDYFMT
Sbjct: 243 DASHLFRHPHRASRPDHFVIIFRGLPGSGKSYLAKMLRDLEVENGGDAPRIHSMDDYFMT 302

Query: 95  XXXXXXXXXXXXXXXXXXXXKRVTKKVMEYC 3
                               K VTKKVMEYC
Sbjct: 303 EVGKVEDGEASKSSSSGRNKKPVTKKVMEYC 333


>ref|XP_003524936.1| PREDICTED: uncharacterized protein LOC100775851 [Glycine max]
          Length = 624

 Score =  139 bits (350), Expect = 2e-31
 Identities = 79/155 (50%), Positives = 93/155 (60%), Gaps = 12/155 (7%)
 Frame = -3

Query: 434 SHLQARVSPPQPTSSLYTIPVT---TTDAAPLLHPSARE---------GQPFKLKSISPD 291
           + L+   SPP+   SL+ +P          P   PS RE          Q F +  ++ +
Sbjct: 169 NQLKTYFSPPKKPPSLFPVPEPHPMPQPYYPTAFPSEREPSKQQYLGDSQSFAINQLAAE 228

Query: 290 RPKIIDASSLFKRPNRDTRPDHIVIILRGLPGSGKSYLAKMLRDLEVENGGNAPRIHSMD 111
           RPK+IDAS LF+ P+R +RPDH VIILRGLPGSGKSYLAKMLRDLEVENGG+APRIHSMD
Sbjct: 229 RPKVIDASRLFRHPHRASRPDHFVIILRGLPGSGKSYLAKMLRDLEVENGGDAPRIHSMD 288

Query: 110 DYFMTXXXXXXXXXXXXXXXXXXXXKRVTKKVMEY 6
           DYFMT                    K VTKKVMEY
Sbjct: 289 DYFMTEVEKVEDSEASKSSSSGRSKKLVTKKVMEY 323


>ref|XP_003609011.1| YLP motif-containing protein [Medicago truncatula]
           gi|355510066|gb|AES91208.1| YLP motif-containing protein
           [Medicago truncatula]
          Length = 418

 Score =  136 bits (343), Expect = 2e-30
 Identities = 71/138 (51%), Positives = 86/138 (62%), Gaps = 3/138 (2%)
 Frame = -3

Query: 407 PQPTSSLYTIPVTTTDAAPLLHPSAR---EGQPFKLKSISPDRPKIIDASSLFKRPNRDT 237
           P P    +T     + A P   PS +   + QPF +  ++ ++PK +DAS LF+ P R +
Sbjct: 229 PFPQPYFHTTKPEFSTAFPTEEPSKQYLGDAQPFSINPLAAEKPKFVDASQLFRNPLRTS 288

Query: 236 RPDHIVIILRGLPGSGKSYLAKMLRDLEVENGGNAPRIHSMDDYFMTXXXXXXXXXXXXX 57
           RPDH VIILRG PGSGK+YLAKMLRDLEVENGG+APRIHSMDDYFMT             
Sbjct: 289 RPDHFVIILRGFPGSGKTYLAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDGPKS 348

Query: 56  XXXXXXXKRVTKKVMEYC 3
                  + VTKKVMEYC
Sbjct: 349 SSSGRNKRPVTKKVMEYC 366


Top