BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030191
         (438 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containi...   182   2e-44
ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containi...   182   2e-44
ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containi...   182   3e-44
ref|XP_002445933.1| hypothetical protein SORBIDRAFT_07g028280 [S...   180   1e-43
ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containi...   179   2e-43

>ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  182 bits (462), Expect = 2e-44
 Identities = 82/145 (56%), Positives = 108/145 (74%)
 Frame = -3

Query: 436 EVTLVSVLSVCGHFTALDQGKWVHTYIERNGMRLSDNLGAALVDMYAKCGCVETAYEVFS 257
           E TLVSV+S C    AL+QGKWVH YI+RNG+ ++  LG  L+DMY KCGCVETA EVF 
Sbjct: 508 ETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFY 567

Query: 256 KLDHRNVSTWNALITGLAVNGIAHAALEAFTEMLRLETKPDRITFLGVLMACCHGGLVED 77
            +  + +STWNALI GLA+NG+  ++L+ F+ M +    P+ ITF+GVL AC H GLV++
Sbjct: 568 GMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDE 627

Query: 76  GRYHFKSMLKDYGIQPELKHYGCMV 2
           G++HF SM+ D+ IQP +KHYGCMV
Sbjct: 628 GQHHFYSMIHDHKIQPNVKHYGCMV 652



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 31/154 (20%)
 Frame = -3

Query: 436 EVTLVSVLSVCGHFTALDQGKWVHTYIERNGMRLSDNLGAALVDMYAKCG---------- 287
           EV  VS LS C +   ++ GK +H+   + G     NL  AL+ MY+KCG          
Sbjct: 376 EVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFD 435

Query: 286 ---------------------CVETAYEVFSKLDHRNVSTWNALITGLAVNGIAHAALEA 170
                                 V+ A  +F  +  ++V +W+++I+G A N +    L  
Sbjct: 436 EAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLAL 495

Query: 169 FTEMLRLETKPDRITFLGVLMACCHGGLVEDGRY 68
           F EM     KPD  T + V+ AC     +E G++
Sbjct: 496 FQEMQMSGFKPDETTLVSVISACARLAALEQGKW 529


>ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  182 bits (462), Expect = 2e-44
 Identities = 82/145 (56%), Positives = 108/145 (74%)
 Frame = -3

Query: 436 EVTLVSVLSVCGHFTALDQGKWVHTYIERNGMRLSDNLGAALVDMYAKCGCVETAYEVFS 257
           E TLVSV+S C    AL+QGKWVH YI+RNG+ ++  LG  L+DMY KCGCVETA EVF 
Sbjct: 373 ETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFY 432

Query: 256 KLDHRNVSTWNALITGLAVNGIAHAALEAFTEMLRLETKPDRITFLGVLMACCHGGLVED 77
            +  + +STWNALI GLA+NG+  ++L+ F+ M +    P+ ITF+GVL AC H GLV++
Sbjct: 433 GMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDE 492

Query: 76  GRYHFKSMLKDYGIQPELKHYGCMV 2
           G++HF SM+ D+ IQP +KHYGCMV
Sbjct: 493 GQHHFYSMIHDHKIQPNVKHYGCMV 517



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 31/154 (20%)
 Frame = -3

Query: 436 EVTLVSVLSVCGHFTALDQGKWVHTYIERNGMRLSDNLGAALVDMYAKCG---------- 287
           EV  VS LS C +   ++ GK +H+   + G     NL  AL+ MY+KCG          
Sbjct: 241 EVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFD 300

Query: 286 ---------------------CVETAYEVFSKLDHRNVSTWNALITGLAVNGIAHAALEA 170
                                 V+ A  +F  +  ++V +W+++I+G A N +    L  
Sbjct: 301 EAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLAL 360

Query: 169 FTEMLRLETKPDRITFLGVLMACCHGGLVEDGRY 68
           F EM     KPD  T + V+ AC     +E G++
Sbjct: 361 FQEMQMSGFKPDETTLVSVISACARLAALEQGKW 394


>ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  182 bits (461), Expect = 3e-44
 Identities = 83/145 (57%), Positives = 108/145 (74%)
 Frame = -3

Query: 436 EVTLVSVLSVCGHFTALDQGKWVHTYIERNGMRLSDNLGAALVDMYAKCGCVETAYEVFS 257
           E  LVSV+S C H  ALDQGKWVH YI +NG++++  LG  L+DMY KCGCVE A EVF+
Sbjct: 436 ETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFN 495

Query: 256 KLDHRNVSTWNALITGLAVNGIAHAALEAFTEMLRLETKPDRITFLGVLMACCHGGLVED 77
            ++ + VS+WNALI GLAVNG+   +L+ F+EM      P+ ITF+GVL AC H GLV++
Sbjct: 496 GMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDE 555

Query: 76  GRYHFKSMLKDYGIQPELKHYGCMV 2
           GR HF SM++ +GI+P +KHYGCMV
Sbjct: 556 GRCHFASMIEKHGIEPNVKHYGCMV 580



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 31/154 (20%)
 Frame = -3

Query: 436 EVTLVSVLSVCGHFTALDQGKWVHTYIERNGMRLSDNLGAALVDMYA------------- 296
           EV +VSVLS C H + +  GK +H  + R G+    NL  AL+ MY+             
Sbjct: 304 EVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFN 363

Query: 295 ------------------KCGCVETAYEVFSKLDHRNVSTWNALITGLAVNGIAHAALEA 170
                             KCG VE A  +F  +  +++ +W+A+I+G A +      L  
Sbjct: 364 GSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLAL 423

Query: 169 FTEMLRLETKPDRITFLGVLMACCHGGLVEDGRY 68
           F EM   + +PD    + V+ AC H   ++ G++
Sbjct: 424 FHEMQLGQIRPDETILVSVISACTHLAALDQGKW 457



 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 26/82 (31%), Positives = 49/82 (59%)
 Frame = -3

Query: 316 ALVDMYAKCGCVETAYEVFSKLDHRNVSTWNALITGLAVNGIAHAALEAFTEMLRLETKP 137
           +++ +  K G V  A+++F+++D +++ +W+ALI+G   NG+   AL  F EM     + 
Sbjct: 243 SMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRL 302

Query: 136 DRITFLGVLMACCHGGLVEDGR 71
           D +  + VL AC H  +V+ G+
Sbjct: 303 DEVVVVSVLSACAHLSIVKTGK 324


>ref|XP_002445933.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
           gi|241942283|gb|EES15428.1| hypothetical protein
           SORBIDRAFT_07g028280 [Sorghum bicolor]
          Length = 498

 Score =  180 bits (456), Expect = 1e-43
 Identities = 85/147 (57%), Positives = 108/147 (73%), Gaps = 2/147 (1%)
 Frame = -3

Query: 436 EVTLVSVLSVCGHFTALDQGKWVHTYIERNGMRLSD--NLGAALVDMYAKCGCVETAYEV 263
           EVT+VSVLS C H TAL++G+W H +I+++ M L +  NLGAAL+DMYAKCG  + A ++
Sbjct: 322 EVTMVSVLSACAHLTALEEGRWAHVFIDKHKMVLDNEFNLGAALIDMYAKCGRTDLATKI 381

Query: 262 FSKLDHRNVSTWNALITGLAVNGIAHAALEAFTEMLRLETKPDRITFLGVLMACCHGGLV 83
           F  LD +NVS WNALITGLAVN  A   ++ F +M   E KPD ITF+ VL AC H GLV
Sbjct: 382 FHSLDQKNVSAWNALITGLAVNSDARRCIDVFEQMKMSEEKPDDITFVSVLTACAHAGLV 441

Query: 82  EDGRYHFKSMLKDYGIQPELKHYGCMV 2
           ++GR +F+SM    G+QPELKHYGCMV
Sbjct: 442 DEGRQYFQSMSSACGVQPELKHYGCMV 468


>ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Brachypodium distachyon]
          Length = 555

 Score =  179 bits (455), Expect = 2e-43
 Identities = 84/147 (57%), Positives = 109/147 (74%), Gaps = 2/147 (1%)
 Frame = -3

Query: 436 EVTLVSVLSVCGHFTALDQGKWVHTYIERNGMRLSD--NLGAALVDMYAKCGCVETAYEV 263
           EVT+VSVLS C H TAL++G+W H +I+++ M L    NLGAAL+DMY+KCG  + A ++
Sbjct: 308 EVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLDSEFNLGAALIDMYSKCGRTDLAVKI 367

Query: 262 FSKLDHRNVSTWNALITGLAVNGIAHAALEAFTEMLRLETKPDRITFLGVLMACCHGGLV 83
           F  LD +NVS WNALITGLAVNG   ++++ F +M R   KP+ ITF+GVL AC HGGLV
Sbjct: 368 FHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPNGITFVGVLTACAHGGLV 427

Query: 82  EDGRYHFKSMLKDYGIQPELKHYGCMV 2
           ++GR  F+SM    G+QPE KHYGCMV
Sbjct: 428 DEGRRCFQSMASTCGVQPEAKHYGCMV 454