BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030180
         (390 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61139.1| hypothetical protein VITISV_009489 [Vitis vinifera]   130   1e-28
gb|ABI34339.1| Polyprotein, 3'-partial, putative [Solanum demissum]   123   1e-26
prf||1510387A retrotransposon del1-46                                 121   7e-26
emb|CAN83518.1| hypothetical protein VITISV_035077 [Vitis vinifera]   120   1e-25
gb|AAT38724.1| Putative retrotransposon protein, identical [Sola...   120   1e-25

>emb|CAN61139.1| hypothetical protein VITISV_009489 [Vitis vinifera]
          Length = 984

 Score =  130 bits (326), Expect = 1e-28
 Identities = 67/139 (48%), Positives = 90/139 (64%), Gaps = 9/139 (6%)
 Frame = -1

Query: 390 VDLTVLELHDFDVILGMDWLSAHHAHVDCFSKTVRFHIPGQPVFKFMGSKF--------- 238
           VDL +L+L DFDVILGMDWL+++HA V+CF K V F IPGQP F F              
Sbjct: 3   VDLVLLDLQDFDVILGMDWLASYHASVNCFEKRVTFSIPGQPKFSFERKHVDRPLCMISA 62

Query: 237 FSAGSILTEGSKQKRQYSLMASMGEEKKEAPQLHTIPIVCQFADVFPEDLPGLPPQRAID 58
             A S+L +G +       +AS+   + +  +L  IPIV ++ DVFPEDLPGLPP+R ++
Sbjct: 63  LRASSLLKKGCQ-----GFLASVMSNESDL-KLEDIPIVREYPDVFPEDLPGLPPEREVE 116

Query: 57  FAIDLIPGTAPINMSPYRM 1
           F IDL+PGT P++ +PYRM
Sbjct: 117 FTIDLVPGTGPMSKAPYRM 135


>gb|ABI34339.1| Polyprotein, 3'-partial, putative [Solanum demissum]
          Length = 1475

 Score =  123 bits (309), Expect = 1e-26
 Identities = 65/138 (47%), Positives = 86/138 (62%), Gaps = 9/138 (6%)
 Frame = -1

Query: 387 DLTVLELHDFDVILGMDWLSAHHAHVDCFSKTVRFHIPGQPVFKFMGSK---------FF 235
           DL +L++ DFDVILGMDWLS + A +DCFSKTV   IPG P   + GS+         F 
Sbjct: 552 DLILLDMVDFDVILGMDWLSPYRAVLDCFSKTVTLAIPGIPPVVWQGSRGSTPVGVISFI 611

Query: 234 SAGSILTEGSKQKRQYSLMASMGEEKKEAPQLHTIPIVCQFADVFPEDLPGLPPQRAIDF 55
            A  ++  G       S +A + +  +E P + ++P+V  F DVFP DLPGLPP+R IDF
Sbjct: 612 RARRLVASGC-----LSYLAYVRDVSREVPPVESVPVVRDFIDVFPTDLPGLPPERDIDF 666

Query: 54  AIDLIPGTAPINMSPYRM 1
            I+L PGT PI++ PYRM
Sbjct: 667 PIELEPGTRPISIPPYRM 684


>prf||1510387A retrotransposon del1-46
          Length = 1443

 Score =  121 bits (303), Expect = 7e-26
 Identities = 60/130 (46%), Positives = 83/130 (63%)
 Frame = -1

Query: 390 VDLTVLELHDFDVILGMDWLSAHHAHVDCFSKTVRFHIPGQPVFKFMGSKFFSAGSILTE 211
           VDL +L+L D D++LGMDWL+A+H  +DCFSK V FH+PG P F F G    +     T 
Sbjct: 408 VDLIILDLEDPDILLGMDWLAAYHVVLDCFSKKVTFHLPGIPEFHFHGETQHTFFPTFT- 466

Query: 210 GSKQKRQYSLMASMGEEKKEAPQLHTIPIVCQFADVFPEDLPGLPPQRAIDFAIDLIPGT 31
               +   S +AS+  E    P      IV ++ +VFP+DLPGLPP R I+F I+L+PGT
Sbjct: 467 ---HQPNLSYLASLASEINITPSTDLSLIVREYINVFPDDLPGLPPPREIEFQINLLPGT 523

Query: 30  APINMSPYRM 1
           +PI+++PY M
Sbjct: 524 SPISITPYHM 533


>emb|CAN83518.1| hypothetical protein VITISV_035077 [Vitis vinifera]
          Length = 1194

 Score =  120 bits (301), Expect = 1e-25
 Identities = 65/139 (46%), Positives = 86/139 (61%), Gaps = 9/139 (6%)
 Frame = -1

Query: 390 VDLTVLELHDFDVILGMDWLSAHHAHVDCFSKTVRFHIPGQPVFKFMGS---------KF 238
           VDL +L+L DFDVILGM+WL+++HA +DCF K V F+IP +P F F G            
Sbjct: 275 VDLVLLDLQDFDVILGMNWLASYHASIDCFGKIVTFNIPSRPDFGFEGKHVDKPLHMISA 334

Query: 237 FSAGSILTEGSKQKRQYSLMASMGEEKKEAPQLHTIPIVCQFADVFPEDLPGLPPQRAID 58
             A S+L +G     Q  L   M EE     +L  IPIV  + DVFP+DLPGLPP++ ++
Sbjct: 335 LQASSLLRKGC----QGFLAYVMNEENN--LKLEDIPIVRDYPDVFPDDLPGLPPEKEVE 388

Query: 57  FAIDLIPGTAPINMSPYRM 1
           F ID+  GT PI+ +PYRM
Sbjct: 389 FTIDVALGTTPISKAPYRM 407


>gb|AAT38724.1| Putative retrotransposon protein, identical [Solanum demissum]
          Length = 1602

 Score =  120 bits (300), Expect = 1e-25
 Identities = 58/134 (43%), Positives = 84/134 (62%), Gaps = 4/134 (2%)
 Frame = -1

Query: 390 VDLTVLELHDFDVILGMDWLSAHHAHVDCFSKTVRFHIPGQPVFKFMGSKFFSAGSILTE 211
           VDL  L++ DFDVILGMDWL A +A +DC ++ V+F  P +P+ ++  S     G  ++ 
Sbjct: 543 VDLIELDMVDFDVILGMDWLHACYASIDCRTRVVKFQFPSEPILEWSSSSAVPKGRFISY 602

Query: 210 GSKQKRQYS----LMASMGEEKKEAPQLHTIPIVCQFADVFPEDLPGLPPQRAIDFAIDL 43
              +K         +A + +   E P   ++PIV +F +VFP+DLPG+PP+R IDF IDL
Sbjct: 603 LKARKLVSKGCIYHLARVNDSSVEIPYFQSVPIVREFPEVFPDDLPGIPPEREIDFGIDL 662

Query: 42  IPGTAPINMSPYRM 1
           IP T PI++ PYRM
Sbjct: 663 IPDTRPISIPPYRM 676