BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030165
         (490 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...    85   5e-15
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    76   2e-12
emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga...    70   1e-10
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta...    70   1e-10
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    69   4e-10

>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 6/147 (4%)
 Frame = +2

Query: 11   VSELINHHTRTWNINLLNQLFDHPTSLNIQQIYLPRSQLEDKLHWSLTKKGAHSVKSMYH 190
            V  LI+  +  WNI+LL +LFD      I  + +    +ED L W  TK G ++VKS YH
Sbjct: 745  VKSLIDSRSNFWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYH 804

Query: 191  LLSSHNTQPTI-----PTTNLAFLHNTHC-PRESLFAWKCYHDILPTREHLAQIMHINDK 352
                   + T       TT  A++    C P+   F W+     +P  E+L +   + DK
Sbjct: 805  TARLDLNEGTTLIGPDLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDK 864

Query: 353  SCLLCGMPVESVHHILLVCHFTRKIWA 433
             C+ CG   ES++H L  CH  R+IWA
Sbjct: 865  GCVSCGASEESINHTLFQCHPARQIWA 891


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
            (fragment)
          Length = 1365

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
 Frame = +2

Query: 11   VSELINHHTRTWNINLLNQLFDHPTSLNIQQIYLPRSQLEDKLHWSLTKKGAHSVKSMYH 190
            VS+LI+  +R WN+N+L  LF     + I     P    ED   W  +  G +SVK+ Y 
Sbjct: 960  VSQLIDPTSRNWNLNMLRDLFPWK-DVEIILKQRPLFFKEDSFCWLHSHNGLYSVKTGYE 1018

Query: 191  LLSS------HNTQPTIPTTNLAF--LHNTH-CPRESLFAWKCYHDILPTREHLAQIMHI 343
             LS       +      P+ N  F  + N H  P+  +F WK  H  +P  + L      
Sbjct: 1019 FLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIR 1078

Query: 344  NDKSCLLCGMPVESVHHILLVCHFTRKIWATIPWSVRLSQFEH 472
            +D  CL+C    E+++HIL  C   R++WA    S   S+F +
Sbjct: 1079 SDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSN 1121


>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1365

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 4/164 (2%)
 Frame = +2

Query: 11   VSELINHHTRTWNINLLNQLFDHPTSLNIQQIYLPRSQLEDKLHWSLTKKGAHSVKSMY- 187
            V +L+N   +TWN +L+ + F   T++ +   ++P   L D   WS +K G   VK +Y 
Sbjct: 976  VKDLMNTQQKTWNSSLIWKCFHPDTAMKVLATHIPVEDLSDIFVWSESKSGVPRVKDIYA 1035

Query: 188  -HLLSSHNTQPTIPTTNL--AFLHNTHCPRESLFAWKCYHDILPTREHLAQIMHINDKSC 358
             +LL       T         F  +   P+   F W+  +  L T  +L +   +  + C
Sbjct: 1036 FYLLDKGELNTTKENRQFWNKFWASDLLPKWKFFTWRLLNKALATSSNLRKRNILIQEMC 1095

Query: 359  LLCGMPVESVHHILLVCHFTRKIWATIPWSVRLSQFEHLQVKQW 490
             LC    E+  H+   C+ +R +WA+    +R+     + ++ W
Sbjct: 1096 SLCKQDKENESHLFRDCNISRHVWASSLLGIRICPMTVISIEDW 1139


>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1138

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 9/150 (6%)
 Frame = +2

Query: 11   VSELINHHTRTWNINLLNQLFDHPTSLNIQQIYLPRSQLEDKLHWSLTKKGAHSVKSMYH 190
            V++LIN   R W  +LL +LF +PT + +     P   ++D   W   K G +SVKS Y 
Sbjct: 737  VNDLINFEDRCWKRDLLEELF-YPTDVELITKRNPVVNMDDFWVWLHAKTGEYSVKSGYW 795

Query: 191  LLSSHNTQPTIPTTNLAFLHN---------THCPRESLFAWKCYHDILPTREHLAQIMHI 343
            L    N    I   NL    N            P+  +F W+     LP  + + +    
Sbjct: 796  LAFQSNKLDLIQQANLLPSTNGLKEQVWSTKSSPKIKMFLWRILSAALPVADQIIRRGMS 855

Query: 344  NDKSCLLCGMPVESVHHILLVCHFTRKIWA 433
             D  C +CG   ES +H+L  C   R++WA
Sbjct: 856  IDPRCQICGDEGESTNHVLFTCSMARQVWA 885


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1374

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 9/153 (5%)
 Frame = +2

Query: 11   VSELINHHTRTWNINLLNQLFDHPTSLNIQQIYLPRSQLEDKLHWSLTKKGAHSVKSMYH 190
            V +L+    R WN NL++ LF   T  NI  +     +  D+  W  ++ G +SVKS Y 
Sbjct: 968  VKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSGYW 1027

Query: 191  LLSS-----HNTQPTI-PTTNLAFLHNTHC---PRESLFAWKCYHDILPTREHLAQIMHI 343
            +++      +N Q  + P+ +  F         P+   F W+C ++ L    +LA     
Sbjct: 1028 VMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLA 1087

Query: 344  NDKSCLLCGMPVESVHHILLVCHFTRKIWATIP 442
             +KSC+ C    E+V+H+L  C F R  WA  P
Sbjct: 1088 REKSCVRCPSHGETVNHLLFKCPFARLTWAISP 1120