BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030124
         (301 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]              116   2e-24
gb|ABA94310.1| retrotransposon protein, putative, Ty3-gypsy subc...   110   2e-22
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   107   8e-22
emb|CAE04384.1| OSJNBa0027G07.26 [Oryza sativa Japonica Group]        107   8e-22
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc...   107   1e-21

>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score =  116 bits (291), Expect = 2e-24
 Identities = 56/98 (57%), Positives = 70/98 (71%)
 Frame = -3

Query: 299  RSSTESEYRSLAYTAAEIYWTCXXXXXXXXXXXXXXXLWCDNISAISLSNNPIFHARTKH 120
            RSS E+EYR LAYTAAE+ W                 +WCDNIS+ISL++NP+FH+RTKH
Sbjct: 1257 RSSAEAEYRQLAYTAAELSWL-RSLFRDLNVFLSCPRIWCDNISSISLASNPVFHSRTKH 1315

Query: 119  VEVDYHYVRELVTNKLLDIKYVCTQDQTADVFTKGLAT 6
            +EVDYHYVR+ V  + L + YV T DQTAD+FTKGL+T
Sbjct: 1316 IEVDYHYVRDKVVRQELAVSYVSTADQTADIFTKGLST 1353


>gb|ABA94310.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1762

 Score =  110 bits (274), Expect = 2e-22
 Identities = 50/98 (51%), Positives = 68/98 (69%)
 Frame = -3

Query: 299  RSSTESEYRSLAYTAAEIYWTCXXXXXXXXXXXXXXXLWCDNISAISLSNNPIFHARTKH 120
            RSSTE+EY+++A   AE+ W                 LWCDN+ A  LS+NP+FHARTKH
Sbjct: 1650 RSSTEAEYKAMANATAELIWVRSVLEELGVKIDQSPVLWCDNLGATYLSSNPVFHARTKH 1709

Query: 119  VEVDYHYVRELVTNKLLDIKYVCTQDQTADVFTKGLAT 6
            +E+DYH+V+E V NK+LDI+++ T+DQ AD FTK L+T
Sbjct: 1710 IEIDYHFVQERVANKMLDIRFIGTKDQIADGFTKALST 1747


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score =  107 bits (268), Expect = 8e-22
 Identities = 55/97 (56%), Positives = 64/97 (65%)
 Frame = -3

Query: 299  RSSTESEYRSLAYTAAEIYWTCXXXXXXXXXXXXXXXLWCDNISAISLSNNPIFHARTKH 120
            RSSTESEY++LA   AE+ W                 LWCDN+ A  LS NPIFHARTKH
Sbjct: 1201 RSSTESEYKALANATAELIWVQILLTEISIKSPRAAKLWCDNLGAKYLSANPIFHARTKH 1260

Query: 119  VEVDYHYVRELVTNKLLDIKYVCTQDQTADVFTKGLA 9
            +EVDYH+VR+ V  KLLDI+YV T DQ AD FTK L+
Sbjct: 1261 IEVDYHFVRDRVAKKLLDIEYVPTGDQVADGFTKPLS 1297


>emb|CAE04384.1| OSJNBa0027G07.26 [Oryza sativa Japonica Group]
          Length = 243

 Score =  107 bits (268), Expect = 8e-22
 Identities = 52/97 (53%), Positives = 66/97 (68%)
 Frame = -3

Query: 299 RSSTESEYRSLAYTAAEIYWTCXXXXXXXXXXXXXXXLWCDNISAISLSNNPIFHARTKH 120
           RSSTE+EY++LA   AEI W                 +WCDNI A  LS NP+FHARTKH
Sbjct: 130 RSSTEAEYKALADATAEIMWLHTLLCEIAINAPKAAKMWCDNIGAKYLSANPVFHARTKH 189

Query: 119 VEVDYHYVRELVTNKLLDIKYVCTQDQTADVFTKGLA 9
           +EVDYH+VRE V+ +LL+I+Y+ ++DQ AD FTK LA
Sbjct: 190 IEVDYHFVRERVSRRLLEIEYISSKDQVADGFTKALA 226


>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 900

 Score =  107 bits (267), Expect = 1e-21
 Identities = 52/97 (53%), Positives = 65/97 (67%)
 Frame = -3

Query: 299  RSSTESEYRSLAYTAAEIYWTCXXXXXXXXXXXXXXXLWCDNISAISLSNNPIFHARTKH 120
            RSSTE+EY++LA  AAEI W                 LWCDN+ A  ++ NP+FHARTKH
Sbjct: 789  RSSTEAEYKALANAAAEIIWVRKLLTELGILHPNAARLWCDNLGATYMTANPVFHARTKH 848

Query: 119  VEVDYHYVRELVTNKLLDIKYVCTQDQTADVFTKGLA 9
            +EVDYH+VRE V  KLLDI +V +QDQ AD FTK ++
Sbjct: 849  IEVDYHFVREQVAQKLLDIHFVSSQDQVADGFTKPIS 885