BLASTX nr result

ID: Coptis23_contig00030106 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030106
         (447 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631968.1| PREDICTED: pre-rRNA-processing protein TSR2 ...    64   1e-08
ref|XP_002315767.1| predicted protein [Populus trichocarpa] gi|2...    60   2e-07
ref|XP_002328370.1| predicted protein [Populus trichocarpa] gi|2...    59   3e-07
ref|XP_003552086.1| PREDICTED: uncharacterized protein LOC100817...    59   4e-07
gb|ACU24536.1| unknown [Glycine max]                                   59   5e-07

>ref|XP_003631968.1| PREDICTED: pre-rRNA-processing protein TSR2 homolog [Vitis
           vinifera] gi|297737064|emb|CBI26265.3| unnamed protein
           product [Vitis vinifera]
          Length = 112

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 29/45 (64%), Positives = 37/45 (82%)
 Frame = -3

Query: 175 ELAADILSWFSQPKVALSIDDLEHLLDEHMMLSFNTDTEDGSIEE 41
           +LAADI SWFS+ K  L ++DLE+LL E M+LSFNT+ EDGSIE+
Sbjct: 51  QLAADIFSWFSESKAPLCVEDLENLLHESMLLSFNTEIEDGSIEQ 95


>ref|XP_002315767.1| predicted protein [Populus trichocarpa] gi|222864807|gb|EEF01938.1|
           predicted protein [Populus trichocarpa]
          Length = 126

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 30/56 (53%), Positives = 38/56 (67%)
 Frame = -3

Query: 175 ELAADILSWFSQPKVALSIDDLEHLLDEHMMLSFNTDTEDGSIEEGQNKGFLYKEE 8
           +L  DI SWFSQ K  L  +DLE+LL E ++LSFNT+ EDGSIEE   +  +  EE
Sbjct: 59  QLVLDIFSWFSQSKGTLYAEDLENLLHESLLLSFNTEIEDGSIEEVAEQLMIMHEE 114


>ref|XP_002328370.1| predicted protein [Populus trichocarpa] gi|222838085|gb|EEE76450.1|
           predicted protein [Populus trichocarpa]
          Length = 213

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 34/59 (57%), Positives = 40/59 (67%)
 Frame = -3

Query: 184 LIGELAADILSWFSQPKVALSIDDLEHLLDEHMMLSFNTDTEDGSIEEGQNKGFLYKEE 8
           L  +LA+DILSWF+Q K  L IDDLE +LDE  MLS NT  +DGSIEE   K  +  EE
Sbjct: 60  LAEQLASDILSWFTQSKEPLFIDDLEGILDE-AMLSLNTMIDDGSIEEVAEKLMIMHEE 117


>ref|XP_003552086.1| PREDICTED: uncharacterized protein LOC100817824 [Glycine max]
          Length = 203

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 32/56 (57%), Positives = 39/56 (69%)
 Frame = -3

Query: 175 ELAADILSWFSQPKVALSIDDLEHLLDEHMMLSFNTDTEDGSIEEGQNKGFLYKEE 8
           +LA+DILSWF+Q K  L IDDLE +LD+  MLS N + EDGSIEE   K  +  EE
Sbjct: 48  QLASDILSWFTQSKEPLYIDDLEDILDQG-MLSLNVEVEDGSIEEVAEKLMVMHEE 102


>gb|ACU24536.1| unknown [Glycine max]
          Length = 203

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 32/56 (57%), Positives = 39/56 (69%)
 Frame = -3

Query: 175 ELAADILSWFSQPKVALSIDDLEHLLDEHMMLSFNTDTEDGSIEEGQNKGFLYKEE 8
           +LA+DILSWF+Q K  L IDDLE +LD+  MLS N + EDGSIEE   K  +  EE
Sbjct: 48  QLASDILSWFTQSKEPLYIDDLEDILDQG-MLSLNVEVEDGSIEEVAEKLMVMYEE 102


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