BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030069
         (354 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containi...    65   4e-09
ref|NP_197146.1| pentatricopeptide repeat-containing protein [Ar...    65   4e-09
ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containi...    65   4e-09
emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]    65   4e-09
ref|XP_002523294.1| pentatricopeptide repeat-containing protein,...    65   6e-09

>ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
           gi|449492939|ref|XP_004159147.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
          Length = 535

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 28/39 (71%), Positives = 33/39 (84%)
 Frame = -1

Query: 117 PPIKPWPIRLYPKRLVLMIKRQQNVDLALQIFTYSAHFH 1
           PPIKPWP RL+P RLV MI+RQQN+DLALQIF Y+  +H
Sbjct: 41  PPIKPWPQRLFPNRLVAMIRRQQNLDLALQIFHYAGKYH 79


>ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g16420, mitochondrial; Flags: Precursor
           gi|9759124|dbj|BAB09609.1| salt-inducible protein-like
           [Arabidopsis thaliana] gi|332004907|gb|AED92290.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 535

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = -1

Query: 120 KPPIKPWPIRLYPKRLVLMIKRQQNVDLALQIFTYSAHFH 1
           KPPIKPWP RL+PKRLV MI +QQN+DLALQIF Y+   H
Sbjct: 37  KPPIKPWPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSH 76


>ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial [Vitis vinifera]
           gi|296089757|emb|CBI39576.3| unnamed protein product
           [Vitis vinifera]
          Length = 586

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 34/70 (48%), Positives = 41/70 (58%)
 Frame = -1

Query: 210 PKPHHLKLNETISSFFHSLNTNLSTSAPVSKPPIKPWPIRLYPKRLVLMIKRQQNVDLAL 31
           P  HHL   ++ S+   S             PPIKPWP RL PKR+V MI RQQN+DLAL
Sbjct: 68  PSHHHLAAVDSKSTLLKSYTVT---------PPIKPWPQRLSPKRVVSMISRQQNLDLAL 118

Query: 30  QIFTYSAHFH 1
           QIF ++  FH
Sbjct: 119 QIFDHAGKFH 128


>emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
          Length = 844

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 34/70 (48%), Positives = 41/70 (58%)
 Frame = -1

Query: 210 PKPHHLKLNETISSFFHSLNTNLSTSAPVSKPPIKPWPIRLYPKRLVLMIKRQQNVDLAL 31
           P  HHL   ++ S+   S             PPIKPWP RL PKR+V MI RQQN+DLAL
Sbjct: 68  PSHHHLAAVDSKSTLLKSYTVT---------PPIKPWPQRLSPKRVVSMISRQQNLDLAL 118

Query: 30  QIFTYSAHFH 1
           QIF ++  FH
Sbjct: 119 QIFDHAGKFH 128


>ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537382|gb|EEF39010.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 544

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 34/52 (65%), Positives = 38/52 (73%)
 Frame = -1

Query: 159 SLNTNLSTSAPVSKPPIKPWPIRLYPKRLVLMIKRQQNVDLALQIFTYSAHF 4
           S N  L  S  V+ PPIKPWP RLYPKRLV MI RQQN+DLALQIF Y+  +
Sbjct: 37  SPNNPLPESYTVT-PPIKPWPQRLYPKRLVSMITRQQNLDLALQIFEYAGKY 87