BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030024
         (302 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEM44857.1| ribosomal protein S4 [Hydrastis canadensis]            193   1e-47
ref|YP_740652.1| ribosomal protein S4 [Nandina domestica] gi|122...   193   1e-47
gb|AAP80889.1| small ribosomal protein 4, partial (chloroplast) ...   193   1e-47
gb|AEM44852.1| ribosomal protein S4 [Glaucidium palmatum]             191   4e-47
gb|AEM44864.1| ribosomal protein S4 [Roupala loxensis]                191   5e-47

>gb|AEM44857.1| ribosomal protein S4 [Hydrastis canadensis]
          Length = 182

 Score =  193 bits (491), Expect = 1e-47
 Identities = 97/99 (97%), Positives = 97/99 (97%)
 Frame = +2

Query: 5   LFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDS 184
           LFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDS
Sbjct: 76  LFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDS 135

Query: 185 SPREELPKHLTLHSSQYKGLVNQIIDSKGVGLKINELLV 301
           SP EELPKHLTLHSSQYKGLVNQIIDSK VGLKINELLV
Sbjct: 136 SPHEELPKHLTLHSSQYKGLVNQIIDSKWVGLKINELLV 174


>ref|YP_740652.1| ribosomal protein S4 [Nandina domestica]
           gi|122165959|sp|Q09FV9.1|RR4_NANDO RecName: Full=30S
           ribosomal protein S4, chloroplastic
           gi|114054472|gb|ABI49865.1| ribosomal protein S4
           [Nandina domestica]
          Length = 201

 Score =  193 bits (491), Expect = 1e-47
 Identities = 97/99 (97%), Positives = 97/99 (97%)
 Frame = +2

Query: 5   LFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDS 184
           LFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDS
Sbjct: 95  LFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDS 154

Query: 185 SPREELPKHLTLHSSQYKGLVNQIIDSKGVGLKINELLV 301
           SP EELPKHLTLHSSQYKGLVNQIIDSK VGLKINELLV
Sbjct: 155 SPHEELPKHLTLHSSQYKGLVNQIIDSKWVGLKINELLV 193


>gb|AAP80889.1| small ribosomal protein 4, partial (chloroplast) [Nandina
           domestica]
          Length = 191

 Score =  193 bits (491), Expect = 1e-47
 Identities = 97/99 (97%), Positives = 97/99 (97%)
 Frame = +2

Query: 5   LFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDS 184
           LFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDS
Sbjct: 85  LFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDS 144

Query: 185 SPREELPKHLTLHSSQYKGLVNQIIDSKGVGLKINELLV 301
           SP EELPKHLTLHSSQYKGLVNQIIDSK VGLKINELLV
Sbjct: 145 SPHEELPKHLTLHSSQYKGLVNQIIDSKWVGLKINELLV 183


>gb|AEM44852.1| ribosomal protein S4 [Glaucidium palmatum]
          Length = 187

 Score =  191 bits (486), Expect = 4e-47
 Identities = 95/99 (95%), Positives = 97/99 (97%)
 Frame = +2

Query: 5   LFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDS 184
           LFRLGMASTIPGARQLVNHRHILVNGR+VDIPSYRCKPRDIITTRDEQKSRALIQNYLDS
Sbjct: 81  LFRLGMASTIPGARQLVNHRHILVNGRLVDIPSYRCKPRDIITTRDEQKSRALIQNYLDS 140

Query: 185 SPREELPKHLTLHSSQYKGLVNQIIDSKGVGLKINELLV 301
           SP +ELPKHLTLHSSQYKGLVNQIIDSK VGLKINELLV
Sbjct: 141 SPHQELPKHLTLHSSQYKGLVNQIIDSKWVGLKINELLV 179


>gb|AEM44864.1| ribosomal protein S4 [Roupala loxensis]
          Length = 181

 Score =  191 bits (485), Expect = 5e-47
 Identities = 96/99 (96%), Positives = 96/99 (96%)
 Frame = +2

Query: 5   LFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDS 184
           LFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDS
Sbjct: 75  LFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDS 134

Query: 185 SPREELPKHLTLHSSQYKGLVNQIIDSKGVGLKINELLV 301
           SP EELPKHLTLHS QYKGLVNQIIDSK VGLKINELLV
Sbjct: 135 SPHEELPKHLTLHSFQYKGLVNQIIDSKWVGLKINELLV 173