BLASTX nr result
ID: Coptis23_contig00030008
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00030008
(892 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI22750.3| unnamed protein product [Vitis vinifera] 125 2e-26
ref|XP_002318221.1| predicted protein [Populus trichocarpa] gi|2... 97 7e-18
ref|XP_002510793.1| conserved hypothetical protein [Ricinus comm... 94 4e-17
ref|NP_200042.4| shortage in chiasmata 1 [Arabidopsis thaliana] ... 77 4e-12
gb|ACI22656.1| shortage in chiasmata [Arabidopsis thaliana] 77 4e-12
>emb|CBI22750.3| unnamed protein product [Vitis vinifera]
Length = 1591
Score = 125 bits (313), Expect = 2e-26
Identities = 97/276 (35%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Frame = +2
Query: 101 SLNDKLLYQGRCPNTSMMDNLAKKTRNGINRSENGYNSXXXXXXXXXXXXEDFC-IEENS 277
SLNDKLL + R + + D N N + EDF I ++S
Sbjct: 1279 SLNDKLLGERRGSDAATRD---WHNNNNPEDLHNDFKGEVIDLNDSFLIGEDFSSIAKSS 1335
Query: 278 LLRRL--EKRKNPVVGSSSSARRLSFGTDKYPDFPSIEEINSG--IWNCLKNQNRKF-TG 442
L E ++P G S ++RRLSF +P FP+ EINS IW LK+Q + G
Sbjct: 1336 RFSPLVLELEEDPAAGKSKTSRRLSFSNSSHPTFPTAAEINSNSDIWTTLKDQKQSLGKG 1395
Query: 443 NFDLTNIDSDKEDMLPLKTRGEPLMEKTTQRSKSS----SLRQNVTRPYGIMPSSEVTHS 610
+ + + K D LP+K + + L+E + RS S ++ T Y P S +S
Sbjct: 1396 IVEFEDTEFGKGD-LPMKHQKQ-LLEGSMHRSAKDFCGPSFQEKDTH-YSGTPLSNALNS 1452
Query: 611 PGLQQQSPWTTEFLNKVKEKSRMHQEALLSHNAATLCGYPNQIENTAKRKSPSTLDGYKY 790
LQQ SPWT EFLN+V+EKS++ Q++L + Y + I +KRKSPS L+ YKY
Sbjct: 1453 VHLQQGSPWTIEFLNRVREKSKLRQQSLPCDRSGPCFEYSDNISKVSKRKSPSILEFYKY 1512
Query: 791 QGGSN---SKKAIKRQWHKRFIPPPTVSRTGKASES 889
QGGS+ SKK +++ KR P + G AS S
Sbjct: 1513 QGGSSRSTSKKVSEQKGQKRPFQPSRSYKKGNASAS 1548
>ref|XP_002318221.1| predicted protein [Populus trichocarpa] gi|222858894|gb|EEE96441.1|
predicted protein [Populus trichocarpa]
Length = 1337
Score = 96.7 bits (239), Expect = 7e-18
Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 7/197 (3%)
Frame = +2
Query: 323 SSSARRLSFGTDKYPDFPSIEEINS--GIWNCLKNQNRKFTGNFDLTNIDSDKEDMLPLK 496
S +ARRLSFG + +P+ P+ E NS +W +++ ++ N ID DK + +P+K
Sbjct: 1098 SKAARRLSFGKNSHPNNPTAAEKNSCPDLWTPIESDRQRLPQNRGDPIID-DKHEKVPVK 1156
Query: 497 TRGEPLMEKTTQRSKSSSLR----QNVTRPYGI-MPSSEVTHSPGLQQQSPWTTEFLNKV 661
R L E T R+ S R + ++ G P S+ HS Q SPWT EFLN+V
Sbjct: 1157 PRKNLLEEAFTLRAAGKSTRFPFEEEISHCGGSGTPLSKAIHSAHPQPGSPWTIEFLNRV 1216
Query: 662 KEKSRMHQEALLSHNAATLCGYPNQIENTAKRKSPSTLDGYKYQGGSNSKKAIKRQWHKR 841
+EKSR+ Q++L +R+S S LD +KYQGGS +K +++ K+
Sbjct: 1217 REKSRLRQQSLPPDTCTPDFWNSGNTSKATERRSLSILDFFKYQGGSTPRKVYEQKKQKQ 1276
Query: 842 FIPPPTVSRTGKASESL 892
I + S+ + S SL
Sbjct: 1277 PIQLSSSSQKERTSASL 1293
>ref|XP_002510793.1| conserved hypothetical protein [Ricinus communis]
gi|223549908|gb|EEF51395.1| conserved hypothetical
protein [Ricinus communis]
Length = 1318
Score = 94.0 bits (232), Expect = 4e-17
Identities = 60/177 (33%), Positives = 97/177 (54%), Gaps = 4/177 (2%)
Frame = +2
Query: 323 SSSARRLSFGTDKYPDFPSIEEINSGIWNCLKNQNRKFTGNFDLTNIDSDKEDMLPLKTR 502
S +AR+LSFG +++P FP+ INS + L++ + N SD + +PLK
Sbjct: 1100 SKAARKLSFGRNRHPTFPTAAAINSN--SELRSSENDHGHSLQQNNDYSDCD--MPLKRP 1155
Query: 503 GE----PLMEKTTQRSKSSSLRQNVTRPYGIMPSSEVTHSPGLQQQSPWTTEFLNKVKEK 670
E L + +T+ +K+ R+ ++ +G P S+ HS Q SPWT EFLN+++EK
Sbjct: 1156 KEIVKDVLRQGSTRNAKALPFREEMSH-FGGTPLSKAIHSANPQPGSPWTIEFLNRIREK 1214
Query: 671 SRMHQEALLSHNAATLCGYPNQIENTAKRKSPSTLDGYKYQGGSNSKKAIKRQWHKR 841
R+ Q++L GY + KR+SPS L+ +KY+GGSN K +++ K+
Sbjct: 1215 GRLPQQSLPCDTRTPDFGYTCCMRKATKRRSPSILEFFKYKGGSNPGKIHEQKKRKQ 1271
>ref|NP_200042.4| shortage in chiasmata 1 [Arabidopsis thaliana]
gi|332008813|gb|AED96196.1| shortage in chiasmata 1
[Arabidopsis thaliana]
Length = 1594
Score = 77.4 bits (189), Expect = 4e-12
Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 7/176 (3%)
Frame = +2
Query: 323 SSSARRLSFGTDKYPDFPSIEEINSGIWNCLKNQNRKFTGNFDLTNIDSDKEDMLPLKTR 502
S S+R+LSF P+FP +I+S ++ K+ N L D P K +
Sbjct: 1377 SKSSRKLSFFGSLQPNFPKAADIDSSSERYATEKDSKYDNNTSLRGY----ADNYPAKRQ 1432
Query: 503 GEPLMEKTTQRSKSSS----LRQNVTRPYGIMPSSEVTHSPGLQQQSPWTTEFLNKVKEK 670
L E T+RS + R+ ++ +G P S S Q SPWT +FLN+V+E+
Sbjct: 1433 RTLLEEVLTRRSAVPTTELPFREEISH-FGGSPLSNAIRSSNQVQSSPWTVDFLNRVRER 1491
Query: 671 S--RMHQEALLSHNAATLCGYPNQIEN-TAKRKSPSTLDGYKYQGGSNSKKAIKRQ 829
S R Q++L S+ + P I+ KRKSPS L+ +KY+GG N + KRQ
Sbjct: 1492 SRARKQQQSLPSYASPPSLETPGNIKKANTKRKSPSILEFFKYKGG-NKLQEEKRQ 1546
>gb|ACI22656.1| shortage in chiasmata [Arabidopsis thaliana]
Length = 1594
Score = 77.4 bits (189), Expect = 4e-12
Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 7/176 (3%)
Frame = +2
Query: 323 SSSARRLSFGTDKYPDFPSIEEINSGIWNCLKNQNRKFTGNFDLTNIDSDKEDMLPLKTR 502
S S+R+LSF P+FP +I+S ++ K+ N L D P K +
Sbjct: 1377 SKSSRKLSFFGSLQPNFPKAADIDSSSERYATEKDSKYDNNTSLRGY----ADNYPAKRQ 1432
Query: 503 GEPLMEKTTQRSKSSS----LRQNVTRPYGIMPSSEVTHSPGLQQQSPWTTEFLNKVKEK 670
L E T+RS + R+ ++ +G P S S Q SPWT +FLN+V+E+
Sbjct: 1433 RTLLEEVLTRRSAVPTTELPFREEISH-FGGSPLSNAIRSSNQVQSSPWTVDFLNRVRER 1491
Query: 671 S--RMHQEALLSHNAATLCGYPNQIEN-TAKRKSPSTLDGYKYQGGSNSKKAIKRQ 829
S R Q++L S+ + P I+ KRKSPS L+ +KY+GG N + KRQ
Sbjct: 1492 SRARKQQQSLPSYASPPSLETPGNIKKANTKRKSPSILEFFKYKGG-NKLQEEKRQ 1546