BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029985
         (293 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]    99   3e-19
ref|XP_002326871.1| predicted protein [Populus trichocarpa] gi|2...    94   1e-17
ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containi...    86   2e-15
gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arab...    80   1e-13
ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Ar...    80   1e-13

>emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
          Length = 751

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 49/101 (48%), Positives = 65/101 (64%), Gaps = 4/101 (3%)
 Frame = -1

Query: 293 LLQKPSTKNTIPQIHSVILRNGIENNVNVFTKFISACCSV----PTTGSFLGVRYARRVF 126
           LLQ+  T+  + QIH+ +LRN +E N N+FTKFI+ C S+    P      G+ +ARR+F
Sbjct: 158 LLQQSKTRANLLQIHAFMLRNALETNPNLFTKFIATCSSIALLAPLYDPLAGIVHARRMF 217

Query: 125 DQRTERDDSYLCNCMIKGYVDDYLFKESMTLYRDLKRGTCF 3
           D R  RDD++LCN MIK YV    + ES  LYRDL+R T F
Sbjct: 218 DHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSF 258


>ref|XP_002326871.1| predicted protein [Populus trichocarpa] gi|222835186|gb|EEE73621.1|
           predicted protein [Populus trichocarpa]
          Length = 581

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 46/97 (47%), Positives = 64/97 (65%)
 Frame = -1

Query: 293 LLQKPSTKNTIPQIHSVILRNGIENNVNVFTKFISACCSVPTTGSFLGVRYARRVFDQRT 114
           LLQ+  T+ T+ QIH++ILRN I+ NVN+ TKFI+ C      G     R+AR +FD R+
Sbjct: 8   LLQRCRTRKTLLQIHALILRNAIDANVNILTKFITTC------GQLSSTRHARHLFDNRS 61

Query: 113 ERDDSYLCNCMIKGYVDDYLFKESMTLYRDLKRGTCF 3
            R D++LCN MIK +V      ++ TLY+DL+R TCF
Sbjct: 62  HRGDTFLCNSMIKSHVVMRQLADAFTLYKDLRRETCF 98


>ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
           [Vitis vinifera] gi|297734603|emb|CBI16654.3| unnamed
           protein product [Vitis vinifera]
          Length = 577

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 42/84 (50%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
 Frame = -1

Query: 242 ILRNGIENNVNVFTKFISACCSV----PTTGSFLGVRYARRVFDQRTERDDSYLCNCMIK 75
           +LRN +E N N+FTKFI+ C S+    P      G+ +ARR+FD R  RDD++LCN MIK
Sbjct: 1   MLRNALETNPNLFTKFIATCSSIALLAPLYDPLAGIVHARRMFDHRPHRDDAFLCNSMIK 60

Query: 74  GYVDDYLFKESMTLYRDLKRGTCF 3
            YV    + ES  LYRDL+R T F
Sbjct: 61  AYVGMRQYSESFALYRDLRRNTSF 84


>gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 38/80 (47%), Positives = 54/80 (67%)
 Frame = -1

Query: 242 ILRNGIENNVNVFTKFISACCSVPTTGSFLGVRYARRVFDQRTERDDSYLCNCMIKGYVD 63
           +LR+ IE NV +FTKF+    S       +G+ YAR++FDQR +RDDS+L N MIK Y++
Sbjct: 1   MLRHAIETNVQIFTKFLVISASA------VGIGYARKLFDQRPQRDDSFLSNSMIKAYLE 54

Query: 62  DYLFKESMTLYRDLKRGTCF 3
              + +S  LYRDL++ TCF
Sbjct: 55  TRQYPDSFALYRDLRKETCF 74


>ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g44880 gi|2344896|gb|AAC31836.1| hypothetical protein
           [Arabidopsis thaliana] gi|330255385|gb|AEC10479.1|
           Pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 555

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 38/80 (47%), Positives = 54/80 (67%)
 Frame = -1

Query: 242 ILRNGIENNVNVFTKFISACCSVPTTGSFLGVRYARRVFDQRTERDDSYLCNCMIKGYVD 63
           +LR+ IE NV +FTKF+    S       +G+ YAR++FDQR +RDDS+L N MIK Y++
Sbjct: 1   MLRHAIETNVQIFTKFLVISASA------VGIGYARKLFDQRPQRDDSFLSNSMIKAYLE 54

Query: 62  DYLFKESMTLYRDLKRGTCF 3
              + +S  LYRDL++ TCF
Sbjct: 55  TRQYPDSFALYRDLRKETCF 74