BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029922
         (548 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containi...   302   3e-80
ref|XP_002520317.1| pentatricopeptide repeat-containing protein,...   302   3e-80
ref|XP_002307458.1| predicted protein [Populus trichocarpa] gi|2...   296   1e-78
ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containi...   294   5e-78
ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containi...   289   2e-76

>ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 476

 Score =  302 bits (773), Expect = 3e-80
 Identities = 143/182 (78%), Positives = 163/182 (89%)
 Frame = -1

Query: 548 IFDTMKDRFVPDSKTYSILLEGWGKSPNLPKAREIFREMVGNGCDPDIVTYGIMVDVLCK 369
           IF+ MKD+F+PDSKTYSILLEGWGK+PNLPKAREIFREMV  GCDPDIVTYGIMVD+LCK
Sbjct: 168 IFNGMKDQFIPDSKTYSILLEGWGKAPNLPKAREIFREMVDMGCDPDIVTYGIMVDILCK 227

Query: 368 VGRVDEAINVVREMDGNGCRPTSFIYSVLIHTYGMDNRIEDAIDAFLEMEKNGIVADVVV 189
            GRVDEA+ +V+EMD + C+PTSFIYSVL+HTYG++NRIEDA+  FL+ME+N I ADV V
Sbjct: 228 AGRVDEAVGIVKEMDSSVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAV 287

Query: 188 YNALIGAFCKVNRFKNVYRVLDEMDKKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMI 9
           YNALIGAFCKVN+ KN YRVL+EMD KGI  NSRTCN+ILNSLIS GDTDEAF VFRRMI
Sbjct: 288 YNALIGAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMI 347

Query: 8   KI 3
           K+
Sbjct: 348 KV 349



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 45/168 (26%), Positives = 74/168 (44%)
 Frame = -1

Query: 542 DTMKDRFVPDSKTYSILLEGWGKSPNLPKAREIFREMVGNGCDPDIVTYGIMVDVLCKVG 363
           D  ++    D   Y+ L+  + K   L  A  +  EM   G  P+  T  I+++ L   G
Sbjct: 275 DMERNEIEADVAVYNALIGAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCG 334

Query: 362 RVDEAINVVREMDGNGCRPTSFIYSVLIHTYGMDNRIEDAIDAFLEMEKNGIVADVVVYN 183
             DEA  V R M    C P +  Y+++I  +  ++++E A+  +  M     V  +  ++
Sbjct: 335 DTDEAFRVFRRMI-KVCDPDADTYTMMIKMFCENDKLEMALKVWKYMRLKQFVPSMHTFS 393

Query: 182 ALIGAFCKVNRFKNVYRVLDEMDKKGIPSNSRTCNVILNSLISRGDTD 39
            LI   CK         +L+EM +KGI  +S T   +   LI  G  D
Sbjct: 394 VLINGLCKKGNASKACILLEEMIEKGIRPSSVTFGKLKQLLIKEGRED 441


>ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540536|gb|EEF42103.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 439

 Score =  302 bits (773), Expect = 3e-80
 Identities = 143/182 (78%), Positives = 164/182 (90%)
 Frame = -1

Query: 548 IFDTMKDRFVPDSKTYSILLEGWGKSPNLPKAREIFREMVGNGCDPDIVTYGIMVDVLCK 369
           IFD+ KDRFVPDSKTY+ILLEGWGK+PNLPKAREIFREMV  GC PDIVTYGIMVD+LCK
Sbjct: 147 IFDSSKDRFVPDSKTYTILLEGWGKTPNLPKAREIFREMVDVGCSPDIVTYGIMVDILCK 206

Query: 368 VGRVDEAINVVREMDGNGCRPTSFIYSVLIHTYGMDNRIEDAIDAFLEMEKNGIVADVVV 189
            GRVDEA+++V+EMD   C+PTSFIYSVLIHTYG++NRIEDA+D FL MEKNG+ ADV  
Sbjct: 207 AGRVDEALDIVKEMDLTICKPTSFIYSVLIHTYGIENRIEDAVDTFLGMEKNGVKADVAA 266

Query: 188 YNALIGAFCKVNRFKNVYRVLDEMDKKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMI 9
           YNALIGAFCKVN+FKNVYRVL+EMD KG+  NSRT N+ILN+LI+RG+TDEAF VFRRMI
Sbjct: 267 YNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSRTLNIILNNLIARGETDEAFRVFRRMI 326

Query: 8   KI 3
           K+
Sbjct: 327 KV 328


>ref|XP_002307458.1| predicted protein [Populus trichocarpa] gi|222856907|gb|EEE94454.1|
           predicted protein [Populus trichocarpa]
          Length = 440

 Score =  296 bits (758), Expect = 1e-78
 Identities = 141/182 (77%), Positives = 157/182 (86%)
 Frame = -1

Query: 548 IFDTMKDRFVPDSKTYSILLEGWGKSPNLPKAREIFREMVGNGCDPDIVTYGIMVDVLCK 369
           IFD++KDRFVPDSKTYSILLEGWGK PNLPKAREIFREMV NGC PDIVTYGIMVDVLCK
Sbjct: 147 IFDSIKDRFVPDSKTYSILLEGWGKDPNLPKAREIFREMVSNGCRPDIVTYGIMVDVLCK 206

Query: 368 VGRVDEAINVVREMDGNGCRPTSFIYSVLIHTYGMDNRIEDAIDAFLEMEKNGIVADVVV 189
            GRVDEA+ +V EMD   C+PT FIYSVL+HTYG++NRIEDA+  FLEME NGI  DV V
Sbjct: 207 AGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGIENRIEDAVSTFLEMENNGIEPDVAV 266

Query: 188 YNALIGAFCKVNRFKNVYRVLDEMDKKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMI 9
           YNALIGAFCK NR KNVYRVL+EMD KG+  NSRT N+IL+SLI RG+TDEA+ VF RMI
Sbjct: 267 YNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSSLIGRGETDEAYRVFLRMI 326

Query: 8   KI 3
           K+
Sbjct: 327 KV 328



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 47/195 (24%), Positives = 73/195 (37%), Gaps = 35/195 (17%)
 Frame = -1

Query: 518 PDSKTYSILLEGWGKSPNLPKAREIFREMVGNGCDPDIVTYGIMVDVLCKVGRVDEAINV 339
           P    YS+L+  +G    +  A   F EM  NG +PD+  Y  ++   CK  R+     V
Sbjct: 227 PTPFIYSVLVHTYGIENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRV 286

Query: 338 VREMDGNGCRPTSFIYSVLIHTYGMDNRIEDAIDAFLEMEKNGIVADVVVYNALIGAFCK 159
           + EMD  G  P S  +++++ +       ++A   FL M K     D   Y  +I  FC+
Sbjct: 287 LNEMDCKGVTPNSRTFNIILSSLIGRGETDEAYRVFLRMIKV-CEPDADTYTMMIKMFCE 345

Query: 158 VNRFKNVYRV-----------------------------------LDEMDKKGIPSNSRT 84
            +  K   +V                                   L+EM +KGI  +  T
Sbjct: 346 RDELKKALKVWKYMKLKRFMPSMHTFQVLINGLCEKGDVTQACVLLEEMIEKGIRPSGVT 405

Query: 83  CNVILNSLISRGDTD 39
              +   LI  G  D
Sbjct: 406 FGRLRQLLIKEGRED 420


>ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
           gi|449499065|ref|XP_004160711.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 439

 Score =  294 bits (753), Expect = 5e-78
 Identities = 133/182 (73%), Positives = 160/182 (87%)
 Frame = -1

Query: 548 IFDTMKDRFVPDSKTYSILLEGWGKSPNLPKAREIFREMVGNGCDPDIVTYGIMVDVLCK 369
           IFD MKD+FVPDSKTYSIL+EGWG++PNLPKAREI+REM+ +GC PD VTY IMVDVLCK
Sbjct: 147 IFDNMKDQFVPDSKTYSILIEGWGRAPNLPKAREIYREMIDSGCIPDEVTYSIMVDVLCK 206

Query: 368 VGRVDEAINVVREMDGNGCRPTSFIYSVLIHTYGMDNRIEDAIDAFLEMEKNGIVADVVV 189
            GRVDEA+ +V+EMD N C+P+SFIYSVL+HTYG++NRIEDA+  FLEME+NG++ADV  
Sbjct: 207 AGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVAA 266

Query: 188 YNALIGAFCKVNRFKNVYRVLDEMDKKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMI 9
           YNALI AFCK N+ KNVYRVL +MD KG+  NSRTCN+I+NSLI RG+TDEAF +FRRMI
Sbjct: 267 YNALISAFCKANKMKNVYRVLKDMDLKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRMI 326

Query: 8   KI 3
           K+
Sbjct: 327 KV 328



 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 34/194 (17%)
 Frame = -1

Query: 518 PDSKTYSILLEGWGKSPNLPKAREIFREMVGNGCDPDIVTYGIMVDVLCKVGRVDEAINV 339
           P S  YS+L+  +G    +  A   F EM  NG   D+  Y  ++   CK  ++     V
Sbjct: 227 PSSFIYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRV 286

Query: 338 VREMDGNG----------------------------------CRPTSFIYSVLIHTYGMD 261
           +++MD  G                                  C P    Y+++I  +   
Sbjct: 287 LKDMDLKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRMIKVCEPDVDSYTMIIKMFCGR 346

Query: 260 NRIEDAIDAFLEMEKNGIVADVVVYNALIGAFCKVNRFKNVYRVLDEMDKKGIPSNSRTC 81
             ++ A+  +  M+K   V  +  ++ LI   C++        +L+EM +KGI  +  T 
Sbjct: 347 KELDMALKIWKYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSGATF 406

Query: 80  NVILNSLISRGDTD 39
             + + LI  G  D
Sbjct: 407 GRLRHLLIKEGRKD 420


>ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 461

 Score =  289 bits (740), Expect = 2e-76
 Identities = 136/182 (74%), Positives = 157/182 (86%)
 Frame = -1

Query: 548 IFDTMKDRFVPDSKTYSILLEGWGKSPNLPKAREIFREMVGNGCDPDIVTYGIMVDVLCK 369
           IFD MK +FVPD K+YSILLEGWGK+PNLP+ARE+FREMV  GCDPD+VTYGIMVDVLCK
Sbjct: 169 IFDAMKGQFVPDEKSYSILLEGWGKAPNLPRAREVFREMVEAGCDPDVVTYGIMVDVLCK 228

Query: 368 VGRVDEAINVVREMDGNGCRPTSFIYSVLIHTYGMDNRIEDAIDAFLEMEKNGIVADVVV 189
            GRVDEA+ VV+EMD   CRPTSFIYSVL+HTYG+++RIEDAID FLEM K GI ADVV 
Sbjct: 229 AGRVDEAVEVVKEMDVGNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKKGIKADVVA 288

Query: 188 YNALIGAFCKVNRFKNVYRVLDEMDKKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMI 9
           YNALIGAFCKVN+FKNV+RVL EM+  G+  NSRTCNVI++S+I +G TD AF VF RMI
Sbjct: 289 YNALIGAFCKVNKFKNVHRVLKEMESNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRMI 348

Query: 8   KI 3
           K+
Sbjct: 349 KL 350



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 34/194 (17%)
 Frame = -1

Query: 518 PDSKTYSILLEGWGKSPNLPKAREIFREMVGNGCDPDIVTYGIMVDVLCKVGRVDEAINV 339
           P S  YS+L+  +G    +  A + F EM   G   D+V Y  ++   CKV +      V
Sbjct: 249 PTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKKGIKADVVAYNALIGAFCKVNKFKNVHRV 308

Query: 338 VREMDGNG----------------------------------CRPTSFIYSVLIHTYGMD 261
           ++EM+ NG                                  C P +  Y+++I  +   
Sbjct: 309 LKEMESNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRMIKLCEPDADTYTMMIKMFCEK 368

Query: 260 NRIEDAIDAFLEMEKNGIVADVVVYNALIGAFCKVNRFKNVYRVLDEMDKKGIPSNSRTC 81
           N +E A+  +  M+    V  +  ++ALI   C+ +       V++EM +KGI  +  T 
Sbjct: 369 NELEMALKIWKYMKSKQFVPSMHTFSALIKGLCEKDNAAKACVVMEEMIEKGIRPSRITF 428

Query: 80  NVILNSLISRGDTD 39
             +   LI  G  D
Sbjct: 429 GRLRQLLIKEGRED 442



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 31/139 (22%), Positives = 66/139 (47%)
 Frame = -1

Query: 422 GCDPDIVTYGIMVDVLCKVGRVDEAINVVREMDGNGCRPTSFIYSVLIHTYGMDNRIEDA 243
           G    I  Y +M++ L K+ +     ++V  M   G       + +++  Y   N++++A
Sbjct: 73  GYSHSIRAYHLMIESLAKIRQYQIVWDLVSAMRKKGMLNVE-TFCIMMRKYARANKVDEA 131

Query: 242 IDAFLEMEKNGIVADVVVYNALIGAFCKVNRFKNVYRVLDEMDKKGIPSNSRTCNVILNS 63
           +  F  M+K  +V ++  +N L+ A CK N  +    + D M  + +P + ++ +++L  
Sbjct: 132 VYTFNVMDKYDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAMKGQFVP-DEKSYSILLEG 190

Query: 62  LISRGDTDEAFTVFRRMIK 6
                +   A  VFR M++
Sbjct: 191 WGKAPNLPRAREVFREMVE 209