BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029897
         (339 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI37965.3| unnamed protein product [Vitis vinifera]               79   3e-13
ref|XP_002275925.1| PREDICTED: putative pentatricopeptide repeat...    79   3e-13
ref|XP_002513017.1| pentatricopeptide repeat-containing protein,...    79   3e-13
ref|XP_004158417.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    70   1e-10
ref|XP_004147057.1| PREDICTED: pentatricopeptide repeat-containi...    70   1e-10

>emb|CBI37965.3| unnamed protein product [Vitis vinifera]
          Length = 371

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 44/95 (46%), Positives = 56/95 (58%)
 Frame = +1

Query: 46  LEFYHQAHKHVLKLGFFVECLCR*WRSALVDIFGKLLVLSDASKVFDEIPLTNTVCVNAL 225
           ++F  Q H  V K G+          SALVD++ KL +++DA+ VFDEIP+ NTVC NAL
Sbjct: 26  VKFGAQIHARVEKSGWLSSVFVG---SALVDMYAKLSLINDAAMVFDEIPVKNTVCANAL 82

Query: 226 LSGFEEGQLWDESLSFFSLMRRLGLEYHQFTWKGM 330
           LSG+ E +LW E L F   MR L L    FT   M
Sbjct: 83  LSGYGEAKLWVEGLDFVRKMRSLNLNCDHFTLSAM 117


>ref|XP_002275925.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Vitis vinifera]
          Length = 349

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 44/95 (46%), Positives = 56/95 (58%)
 Frame = +1

Query: 46  LEFYHQAHKHVLKLGFFVECLCR*WRSALVDIFGKLLVLSDASKVFDEIPLTNTVCVNAL 225
           ++F  Q H  V K G+          SALVD++ KL +++DA+ VFDEIP+ NTVC NAL
Sbjct: 4   VKFGAQIHARVEKSGWLSSVFVG---SALVDMYAKLSLINDAAMVFDEIPVKNTVCANAL 60

Query: 226 LSGFEEGQLWDESLSFFSLMRRLGLEYHQFTWKGM 330
           LSG+ E +LW E L F   MR L L    FT   M
Sbjct: 61  LSGYGEAKLWVEGLDFVRKMRSLNLNCDHFTLSAM 95


>ref|XP_002513017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548028|gb|EEF49520.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 349

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 42/95 (44%), Positives = 55/95 (57%)
 Frame = +1

Query: 46  LEFYHQAHKHVLKLGFFVECLCR*WRSALVDIFGKLLVLSDASKVFDEIPLTNTVCVNAL 225
           + F  Q H HV+K G+          SAL+D++ KL   SDA+ VFDEIP+ NTVC NAL
Sbjct: 4   VNFGEQIHAHVIKSGWLSSVFVG---SALIDLYSKLSFPSDAATVFDEIPVKNTVCANAL 60

Query: 226 LSGFEEGQLWDESLSFFSLMRRLGLEYHQFTWKGM 330
           LSG+ E +LW + +     M  L L+Y  FT   M
Sbjct: 61  LSGYIEAKLWYQGVELIKEMPFLSLDYDNFTLSAM 95


>ref|XP_004158417.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g18750, chloroplastic-like [Cucumis sativus]
          Length = 497

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 37/86 (43%), Positives = 52/86 (60%)
 Frame = +1

Query: 61  QAHKHVLKLGFFVECLCR*WRSALVDIFGKLLVLSDASKVFDEIPLTNTVCVNALLSGFE 240
           Q H  V K G+          SA+VD++ K  ++ DA +VFDE+P+ NTVC NALL+G+ 
Sbjct: 160 QIHAFVGKSGWLCSVFVG---SAIVDMYAKNSLIYDAVEVFDEMPMKNTVCANALLAGYG 216

Query: 241 EGQLWDESLSFFSLMRRLGLEYHQFT 318
           E ++W E L     M+ L L+Y QFT
Sbjct: 217 EARMWVEGLELLRKMQGLDLKYDQFT 242


>ref|XP_004147057.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 469

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 37/86 (43%), Positives = 52/86 (60%)
 Frame = +1

Query: 61  QAHKHVLKLGFFVECLCR*WRSALVDIFGKLLVLSDASKVFDEIPLTNTVCVNALLSGFE 240
           Q H  V K G+          SA+VD++ K  ++ DA +VFDE+P+ NTVC NALL+G+ 
Sbjct: 132 QIHAFVGKSGWLCSVFVG---SAIVDMYAKNSLIYDAVEVFDEMPMKNTVCANALLAGYG 188

Query: 241 EGQLWDESLSFFSLMRRLGLEYHQFT 318
           E ++W E L     M+ L L+Y QFT
Sbjct: 189 EARMWVEGLELLRKMQGLDLKYDQFT 214