BLASTX nr result

ID: Coptis23_contig00029892 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029892
         (1546 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004158096.1| PREDICTED: uncharacterized protein LOC101226...    98   5e-18
emb|CBI31056.3| unnamed protein product [Vitis vinifera]               98   7e-18
emb|CAA75349.1| ERT2 [Arabidopsis thaliana]                            92   3e-16
ref|NP_193820.1| ethylene-responsive/regulated nuclear protein [...    92   3e-16
ref|XP_002330556.1| predicted protein [Populus trichocarpa] gi|2...    92   4e-16

>ref|XP_004158096.1| PREDICTED: uncharacterized protein LOC101226968 [Cucumis sativus]
          Length = 439

 Score = 98.2 bits (243), Expect = 5e-18
 Identities = 75/209 (35%), Positives = 104/209 (49%), Gaps = 20/209 (9%)
 Frame = +3

Query: 3   KITRVSRFVADIRSSSKHGESLVVQTGFPTSLIDLIVKNRDRL----------NKKKTRK 152
           + +R+S+ VAD+ S  K   SLVV+TGFPTS++DL VK+RDRL           KKK  K
Sbjct: 10  RASRISQIVADLHSP-KRASSLVVETGFPTSIVDLFVKHRDRLRKHSARRKSKKKKKITK 68

Query: 153 NSENEIVACCSEIE---VGQDGPSIPLAPFILNAINNLFGXXXXXXXXXXXXXXNLILNE 323
           N  ++ +A  S +E   +G  G  +      +  ++                    ++  
Sbjct: 69  NEFHDSIAQLSPLELDSIGSSGSCVLRGNLEIEDLDEARKCSGRGCEPIRDRTETCVV-- 126

Query: 324 DRGVDVSSTNRFYKIFIMMSVVLVLALATKRLVIGITLWAFLLFFLEFCCNYLISLLKSC 503
             G D +S N F    + M VV VLAL+ K+LV+GITL AFLLF LEF    ++   K C
Sbjct: 127 --GGDAASGNGFCLFVLKMFVVAVLALSAKKLVVGITLSAFLLFLLEFLGTRIVRFFKPC 184

Query: 504 INGCKGF-----MVSIHL--GKDKNLIGV 569
           I+G          VS HL  GKD  +I V
Sbjct: 185 IHGEAALRSLIQKVSKHLWIGKDDPVIQV 213


>emb|CBI31056.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score = 97.8 bits (242), Expect = 7e-18
 Identities = 66/173 (38%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
 Frame = +3

Query: 3   KITRVSRFVADIRSSSKHGESLVVQTGFPTSLIDLIVKNRDRLNKKKTRKNSENEIVACC 182
           ++ R+SRFVAD++S  K G SLVV+TGFPTSLIDL VKNRDRL K + R++  ++ V   
Sbjct: 57  RVGRISRFVADLQSP-KRGGSLVVETGFPTSLIDLFVKNRDRLKKPRKRRSRVSDPVP-- 113

Query: 183 SEIEVGQDGPSIPLAPFILNAINNLFGXXXXXXXXXXXXXXNLILNEDRGVDVSSTNR-- 356
            +    Q  P    AP   ++ + +                +L+   D G +V  + R  
Sbjct: 114 QQPVEPQRRPESVQAPASSDSFSEIRSVECEEEEIGGIDGGSLV---DGGGEVEESVRRP 170

Query: 357 ----FYKIFIMMSVVLVLALATKRLVIGITLWAFLLFFLEFCCNYLISLLKSC 503
                    + MSVV++LAL TK+L +GIT+ AFLL FLE+   ++  LL  C
Sbjct: 171 SGRGVTVAVLKMSVVVILALGTKKLAVGITMSAFLLLFLEYAAKWVFGLLTPC 223


>emb|CAA75349.1| ERT2 [Arabidopsis thaliana]
          Length = 407

 Score = 92.4 bits (228), Expect = 3e-16
 Identities = 68/180 (37%), Positives = 93/180 (51%), Gaps = 13/180 (7%)
 Frame = +3

Query: 3   KITRVSRFVADIRSSSKHGESLVVQTGFPTSLIDLIVKNRDRLNKKKTRKNSENEIVACC 182
           K +R+SRFV+D + S KHG SLVV+TGFPTSLIDL VKNRDRL K+ +++N++N      
Sbjct: 9   KSSRISRFVSDFQQSPKHGGSLVVETGFPTSLIDLFVKNRDRLKKQSSKRNNKNN--KAQ 66

Query: 183 SEIEVGQDGP---------SIP--LAPFILNAINNLFGXXXXXXXXXXXXXXNLILNEDR 329
           +E  V    P         S+P  L P ++   + L                 +I  +D 
Sbjct: 67  TETRVLSPPPPHMSLQRRMSLPSKLDPALVTEDSPL------VRKIEETSVPEIIHEDDG 120

Query: 330 GVDVSSTNRFYKIFIMMSV--VLVLALATKRLVIGITLWAFLLFFLEFCCNYLISLLKSC 503
           G           I ++  V  V VLAL+TK+L +GITL AF L FLE     + + L  C
Sbjct: 121 GHRGGGGGGCVLIVVVFKVFMVAVLALSTKKLAVGITLSAFALLFLELAVARVFTYLNLC 180


>ref|NP_193820.1| ethylene-responsive/regulated nuclear protein [Arabidopsis
           thaliana] gi|5262778|emb|CAB45883.1| ethylene-regulated
           transcript 2 (ERT2) [Arabidopsis thaliana]
           gi|7268884|emb|CAB79088.1| ethylene-regulated transcript
           2 (ERT2) [Arabidopsis thaliana]
           gi|26452095|dbj|BAC43137.1| putative ethylene-regulated
           transcript 2 ERT2 [Arabidopsis thaliana]
           gi|332658971|gb|AEE84371.1|
           ethylene-responsive/regulated nuclear protein
           [Arabidopsis thaliana]
          Length = 405

 Score = 92.4 bits (228), Expect = 3e-16
 Identities = 68/180 (37%), Positives = 93/180 (51%), Gaps = 13/180 (7%)
 Frame = +3

Query: 3   KITRVSRFVADIRSSSKHGESLVVQTGFPTSLIDLIVKNRDRLNKKKTRKNSENEIVACC 182
           K +R+SRFV+D + S KHG SLVV+TGFPTSLIDL VKNRDRL K+ +++N++N      
Sbjct: 9   KSSRISRFVSDFQQSPKHGGSLVVETGFPTSLIDLFVKNRDRLKKQSSKRNNKNN--KAQ 66

Query: 183 SEIEVGQDGP---------SIP--LAPFILNAINNLFGXXXXXXXXXXXXXXNLILNEDR 329
           +E  V    P         S+P  L P ++   + L                 +I  +D 
Sbjct: 67  TETRVLSPPPPHMSLQRRMSLPSKLDPALVTEDSPL------VRKIEETSVPEIIHEDDG 120

Query: 330 GVDVSSTNRFYKIFIMMSV--VLVLALATKRLVIGITLWAFLLFFLEFCCNYLISLLKSC 503
           G           I ++  V  V VLAL+TK+L +GITL AF L FLE     + + L  C
Sbjct: 121 GHRGGGGGGCVLIVVVFKVFMVAVLALSTKKLAVGITLSAFALLFLELAVARVFTYLNLC 180


>ref|XP_002330556.1| predicted protein [Populus trichocarpa] gi|222872114|gb|EEF09245.1|
           predicted protein [Populus trichocarpa]
          Length = 487

 Score = 92.0 bits (227), Expect = 4e-16
 Identities = 82/249 (32%), Positives = 122/249 (48%), Gaps = 30/249 (12%)
 Frame = +3

Query: 3   KITRVSRFVADIRSSSKHGESLVVQTGFPTSLIDLIVKNRDRL----NKKKTRKNSENEI 170
           K+ R SR VAD++S  K G SLVV+TGFPTSL+DL VKNR+RL     KKK +K  + ++
Sbjct: 9   KVARFSRIVADLQSP-KRGNSLVVETGFPTSLVDLFVKNRERLKKPTGKKKKKKKRQQQL 67

Query: 171 VACCSEIEVGQD---GPSIPL--APFILNAINNLFGXXXXXXXXXXXXXXNLILNEDRGV 335
                E+ +        SI L  +P  +  + N+                  ++ +D  V
Sbjct: 68  QEVEEELVISDPIFVSSSIELVDSPGPIQNLENMESFDVCDLVSQLLP----VVEDDEDV 123

Query: 336 ----------DVSSTN---------RFYKIFIMMSVVLVLALATKRLVIGITLWAFLLFF 458
                     DV  T+         R   + + M +V+VL L+TK+LV+GIT+ AF+L F
Sbjct: 124 EDVDDVEDVDDVKVTDKKCWNEKEKRLLFVVLKMFLVVVLGLSTKKLVVGITMSAFVLIF 183

Query: 459 LEFCCNYLISLLKSCINGCKGFMVSIHLGKDKNLIGVEERVVNNFVGFR--EEFDDLIKE 632
           LE+   +++  LK C+N      V I L          ERV + F+  +   + DD  KE
Sbjct: 184 LEYVGKHVLCFLKPCLN------VEIVLEL------FVERVSSAFLMLKGVRKCDDSRKE 231

Query: 633 KRIKEIDSE 659
             I+EI+ E
Sbjct: 232 LIIQEIEQE 240


Top