BLASTX nr result
ID: Coptis23_contig00029876
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00029876
(507 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptas... 102 1e-28
ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding sub... 100 1e-28
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo... 94 4e-28
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ... 94 4e-28
gb|AAP53315.2| retrotransposon protein, putative, unclassified [... 94 4e-28
>gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 653
Score = 102 bits (255), Expect(2) = 1e-28
Identities = 46/94 (48%), Positives = 69/94 (73%)
Frame = +3
Query: 6 RGVKQGDLLSPYLFIIVDEALSRLIAQAEDSNLISGIKIRKRAPGISHLFYADDSIVFCK 185
RG++QGD LSPYLFI+ E +S LI QAE +N++ G+K+ KRAP +SHL +ADDS +F +
Sbjct: 223 RGLRQGDPLSPYLFILCAEGMSTLIKQAERNNILHGVKVCKRAPTVSHLLFADDSFLFFR 282
Query: 186 ADLKQSESMMDLIKTYCKASGQVVNFDKSRAFFS 287
A+ ++ ++ D++ TY AS Q++N KS +FS
Sbjct: 283 ANENETRALKDILDTYANASDQLINMQKSEIYFS 316
Score = 48.9 bits (115), Expect(2) = 1e-28
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = +1
Query: 361 YLGMPILLGKKKSEDFEYLIHKVQRKITGWKAKVISLAGRTTLIKSVAQ 507
YLG+P ++G+ K F Y+ ++ +I+G +K++S AG+ LIKSVAQ
Sbjct: 342 YLGLPSMIGRSKKSIFNYIKDRIWNRISGLSSKMLSQAGKEVLIKSVAQ 390
>ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula] gi|355513943|gb|AES95566.1| Replication
protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
Length = 1723
Score = 100 bits (249), Expect(2) = 1e-28
Identities = 52/94 (55%), Positives = 65/94 (69%)
Frame = +3
Query: 6 RGVKQGDLLSPYLFIIVDEALSRLIAQAEDSNLISGIKIRKRAPGISHLFYADDSIVFCK 185
RG++QGD LSPYLFII E LS LI QAE S ISG KI K AP ISHL +ADD +F K
Sbjct: 1055 RGLRQGDPLSPYLFIICAEGLSSLIRQAEGSGTISGAKICKNAPIISHLLFADDCFLFFK 1114
Query: 186 ADLKQSESMMDLIKTYCKASGQVVNFDKSRAFFS 287
A Q++ M ++++ Y +SGQ +NF KS F+S
Sbjct: 1115 AKSGQAQGMKNILEMYESSSGQSINFQKSEVFYS 1148
Score = 50.8 bits (120), Expect(2) = 1e-28
Identities = 22/49 (44%), Positives = 34/49 (69%)
Frame = +1
Query: 361 YLGMPILLGKKKSEDFEYLIHKVQRKITGWKAKVISLAGRTTLIKSVAQ 507
YLG+P ++G+ + F+++ +V +KI W +K +S AGR TLIKSV Q
Sbjct: 1174 YLGVPSMVGRSRISTFKFVKERVWKKINSWSSKCLSQAGRETLIKSVLQ 1222
>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
Length = 1594
Score = 93.6 bits (231), Expect(2) = 4e-28
Identities = 41/95 (43%), Positives = 67/95 (70%)
Frame = +3
Query: 3 ERGVKQGDLLSPYLFIIVDEALSRLIAQAEDSNLISGIKIRKRAPGISHLFYADDSIVFC 182
ERG++QGD LSPYLF++ E S L+++ E+ + GI+I + AP +SHL +ADDS++ C
Sbjct: 859 ERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILC 918
Query: 183 KADLKQSESMMDLIKTYCKASGQVVNFDKSRAFFS 287
+A+ +++ + +++ Y + SGQV+N DKS FS
Sbjct: 919 RANGGEAQQLQTILQIYEECSGQVINKDKSAVMFS 953
Score = 56.2 bits (134), Expect(2) = 4e-28
Identities = 24/65 (36%), Positives = 43/65 (66%)
Frame = +1
Query: 313 SILKKWKMRLFDEKEVYLGMPILLGKKKSEDFEYLIHKVQRKITGWKAKVISLAGRTTLI 492
+++ M+ E YLG+P+ +G+ +++ F YL ++ ++I GWK K++S AG+ LI
Sbjct: 963 AVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILI 1022
Query: 493 KSVAQ 507
K+VAQ
Sbjct: 1023 KAVAQ 1027
>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1509
Score = 93.6 bits (231), Expect(2) = 4e-28
Identities = 41/95 (43%), Positives = 67/95 (70%)
Frame = +3
Query: 3 ERGVKQGDLLSPYLFIIVDEALSRLIAQAEDSNLISGIKIRKRAPGISHLFYADDSIVFC 182
ERG++QGD LSPYLF++ E S L+++ E+ + GI+I + AP +SHL +ADDS++ C
Sbjct: 831 ERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILC 890
Query: 183 KADLKQSESMMDLIKTYCKASGQVVNFDKSRAFFS 287
+A+ +++ + +++ Y + SGQV+N DKS FS
Sbjct: 891 RANGGEAQQLQTILQIYEECSGQVINKDKSAVMFS 925
Score = 56.2 bits (134), Expect(2) = 4e-28
Identities = 24/65 (36%), Positives = 43/65 (66%)
Frame = +1
Query: 313 SILKKWKMRLFDEKEVYLGMPILLGKKKSEDFEYLIHKVQRKITGWKAKVISLAGRTTLI 492
+++ M+ E YLG+P+ +G+ +++ F YL ++ ++I GWK K++S AG+ LI
Sbjct: 935 AVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILI 994
Query: 493 KSVAQ 507
K+VAQ
Sbjct: 995 KAVAQ 999
>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1505
Score = 93.6 bits (231), Expect(2) = 4e-28
Identities = 41/95 (43%), Positives = 67/95 (70%)
Frame = +3
Query: 3 ERGVKQGDLLSPYLFIIVDEALSRLIAQAEDSNLISGIKIRKRAPGISHLFYADDSIVFC 182
ERG++QGD LSPYLF++ E S L+++ E+ + GI+I + AP +SHL +ADDS++ C
Sbjct: 827 ERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILC 886
Query: 183 KADLKQSESMMDLIKTYCKASGQVVNFDKSRAFFS 287
+A+ +++ + +++ Y + SGQV+N DKS FS
Sbjct: 887 RANGGEAQQLQTILQIYEECSGQVINKDKSAVMFS 921
Score = 56.2 bits (134), Expect(2) = 4e-28
Identities = 24/65 (36%), Positives = 43/65 (66%)
Frame = +1
Query: 313 SILKKWKMRLFDEKEVYLGMPILLGKKKSEDFEYLIHKVQRKITGWKAKVISLAGRTTLI 492
+++ M+ E YLG+P+ +G+ +++ F YL ++ ++I GWK K++S AG+ LI
Sbjct: 931 AVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILI 990
Query: 493 KSVAQ 507
K+VAQ
Sbjct: 991 KAVAQ 995