BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029830
         (640 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002327958.1| predicted protein [Populus trichocarpa] gi|2...   268   5e-70
ref|XP_004152299.1| PREDICTED: pentatricopeptide repeat-containi...   259   2e-67
ref|XP_003552721.1| PREDICTED: pentatricopeptide repeat-containi...   247   1e-63
gb|ACU18704.1| unknown [Glycine max]                                  247   1e-63
ref|XP_003624339.1| Pentatricopeptide repeat-containing protein ...   236   2e-60

>ref|XP_002327958.1| predicted protein [Populus trichocarpa] gi|222837367|gb|EEE75746.1|
           predicted protein [Populus trichocarpa]
          Length = 484

 Score =  268 bits (686), Expect = 5e-70
 Identities = 132/213 (61%), Positives = 167/213 (78%)
 Frame = +1

Query: 1   SNILVGLCKFGRIESAVEVFHEMCSANLVPTKSAVNFLIGQLCRLNTNEECLERVRVRNF 180
           SN+LVGLCKFGR E+A+E F EM  A LVPT+SAVNFL+ +LC L+  E  +  VRV + 
Sbjct: 149 SNVLVGLCKFGRFETAIEFFQEMGRARLVPTRSAVNFLMRELCLLSAKEGAVNEVRVHSS 208

Query: 181 RRPFTILVPNVGLDGGAILAAVKIFWLMGDLGLFPSPFIINQLISELCRLRKIDEAMEIF 360
           R+P+TILVPNVG   GAI  AV +F  + DLGL PS F+I QLI+ELCRL K+ EA EI 
Sbjct: 209 RKPYTILVPNVGPKSGAIRPAVGVFLAVCDLGLLPSTFVIIQLITELCRLGKMTEAFEIL 268

Query: 361 WVVEKKRLNCLEESYTIVIRALCDVRRVEEACQLFGQMLSQELKPKLVLYNSLICMLCKL 540
            VVE+++ NC+ E Y+IV++ALC+ R VEEA  LFG+MLS ELKPKLV+YNS+ICMLCK+
Sbjct: 269 KVVEERKQNCVAEGYSIVMQALCEYRLVEEASHLFGRMLSLELKPKLVVYNSIICMLCKV 328

Query: 541 GNVDKADRLFEIMNKRRCGPDNVTYTALIHGYG 639
           G +D A R+F+IM+K+RC PD+VTYTAL+H YG
Sbjct: 329 GRLDDAQRVFQIMSKKRCLPDSVTYTALVHAYG 361



 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 7/188 (3%)
 Frame = +1

Query: 25  KFGRIESAVEVFHEMCSANLVPTKSAVNFLIGQLCRLNTNEECLERVRVRNFRRPFTI-- 198
           K G I  AV VF  +C   L+P+   +  LI +LCRL    E  E ++V   R+   +  
Sbjct: 222 KSGAIRPAVGVFLAVCDLGLLPSTFVIIQLITELCRLGKMTEAFEILKVVEERKQNCVAE 281

Query: 199 ---LVPNVGLDGGAILAAVKIFWLMGDLGLFPSPFIINQLISELCRLRKIDEAMEIFWVV 369
              +V     +   +  A  +F  M  L L P   + N +I  LC++ ++D+A  +F ++
Sbjct: 282 GYSIVMQALCEYRLVEEASHLFGRMLSLELKPKLVVYNSIICMLCKVGRLDDAQRVFQIM 341

Query: 370 EKKRLNCLEES--YTIVIRALCDVRRVEEACQLFGQMLSQELKPKLVLYNSLICMLCKLG 543
            KKR  CL +S  YT ++ A  + R  E A  L  +ML     P    Y  +  +L + G
Sbjct: 342 SKKR--CLPDSVTYTALVHAYGEARNWEVAYDLLMEMLGLGWIPHFHAYTLVDKLLREHG 399

Query: 544 NVDKADRL 567
            +D +++L
Sbjct: 400 RIDLSNKL 407


>ref|XP_004152299.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
           gi|449484825|ref|XP_004156991.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 579

 Score =  259 bits (663), Expect = 2e-67
 Identities = 125/213 (58%), Positives = 159/213 (74%)
 Frame = +1

Query: 1   SNILVGLCKFGRIESAVEVFHEMCSANLVPTKSAVNFLIGQLCRLNTNEECLERVRVRNF 180
           SN+++GLCKFGR  +A+E F EM  A LVPT++AVN LIG LC L+  E  +E+VRV + 
Sbjct: 244 SNVIIGLCKFGRYSTAIEAFGEMYRAGLVPTRTAVNILIGNLCSLSAKEGAVEKVRVNST 303

Query: 181 RRPFTILVPNVGLDGGAILAAVKIFWLMGDLGLFPSPFIINQLISELCRLRKIDEAMEIF 360
            RPFT+LVPNV    GAI  AV IFW    L L PS F+  QLISELCRL ++ EA+ + 
Sbjct: 304 YRPFTVLVPNVNPKSGAIEPAVGIFWAANKLSLVPSSFVTVQLISELCRLGQMQEAIRVL 363

Query: 361 WVVEKKRLNCLEESYTIVIRALCDVRRVEEACQLFGQMLSQELKPKLVLYNSLICMLCKL 540
            VVE  +L C EE Y++V++ALC+ R V+EA  LFG+MLSQ +KPKL +YN +ICMLCKL
Sbjct: 364 KVVEGDKLRCAEECYSVVMKALCEHRHVDEASDLFGRMLSQGMKPKLAIYNYVICMLCKL 423

Query: 541 GNVDKADRLFEIMNKRRCGPDNVTYTALIHGYG 639
           GN+D A+R+F IMNK+RC PD+VTY+ALIH YG
Sbjct: 424 GNLDSAERVFGIMNKKRCAPDHVTYSALIHAYG 456



 Score = 62.0 bits (149), Expect = 9e-08
 Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 6/182 (3%)
 Frame = +1

Query: 25  KFGRIESAVEVFHEMCSANLVPTKSAVNFLIGQLCRLNTNEECLERVRV------RNFRR 186
           K G IE AV +F      +LVP+      LI +LCRL   +E +  ++V      R    
Sbjct: 317 KSGAIEPAVGIFWAANKLSLVPSSFVTVQLISELCRLGQMQEAIRVLKVVEGDKLRCAEE 376

Query: 187 PFTILVPNVGLDGGAILAAVKIFWLMGDLGLFPSPFIINQLISELCRLRKIDEAMEIFWV 366
            +++++  +  +   +  A  +F  M   G+ P   I N +I  LC+L  +D A  +F +
Sbjct: 377 CYSVVMKAL-CEHRHVDEASDLFGRMLSQGMKPKLAIYNYVICMLCKLGNLDSAERVFGI 435

Query: 367 VEKKRLNCLEESYTIVIRALCDVRRVEEACQLFGQMLSQELKPKLVLYNSLICMLCKLGN 546
           + KKR      +Y+ +I A  + R    A  L  +MLS  + P   +Y+ +  ++ + G 
Sbjct: 436 MNKKRCAPDHVTYSALIHAYGENRDWSAAYGLLKEMLSLGMSPHFHVYSIVDKLMREHGQ 495

Query: 547 VD 552
           +D
Sbjct: 496 ID 497


>ref|XP_003552721.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 367

 Score =  247 bits (631), Expect = 1e-63
 Identities = 120/213 (56%), Positives = 161/213 (75%)
 Frame = +1

Query: 1   SNILVGLCKFGRIESAVEVFHEMCSANLVPTKSAVNFLIGQLCRLNTNEECLERVRVRNF 180
           SN++VGLCK GR+ESA+E+F  M    ++PT+SAVN LIG+LC ++  E  +E+VRVRN 
Sbjct: 34  SNMIVGLCKLGRLESALEIFDRMNRIGVLPTRSAVNLLIGELCLMSGKEGSVEKVRVRNT 93

Query: 181 RRPFTILVPNVGLDGGAILAAVKIFWLMGDLGLFPSPFIINQLISELCRLRKIDEAMEIF 360
           RRP+TILVPN+G + GAI  AV++FW +   GL PS F++ +L+SELCRL    EA+ + 
Sbjct: 94  RRPYTILVPNMGGNSGAIQPAVQVFWAVCSSGLLPSAFVVVKLMSELCRLGNTVEAVRVL 153

Query: 361 WVVEKKRLNCLEESYTIVIRALCDVRRVEEACQLFGQMLSQELKPKLVLYNSLICMLCKL 540
            +VE+++L  ++E Y++VI ALC+  RVEEA  LFG+MLS  LKPKLV+YNS+I MLCK 
Sbjct: 154 RIVEERKLTSVQEGYSVVINALCECCRVEEASDLFGRMLSCGLKPKLVVYNSVISMLCKF 213

Query: 541 GNVDKADRLFEIMNKRRCGPDNVTYTALIHGYG 639
           G +  A R+FEIMNK RC PD +TYTALIH +G
Sbjct: 214 GKLKDATRVFEIMNKNRCLPDGLTYTALIHSHG 246


>gb|ACU18704.1| unknown [Glycine max]
          Length = 367

 Score =  247 bits (631), Expect = 1e-63
 Identities = 120/213 (56%), Positives = 161/213 (75%)
 Frame = +1

Query: 1   SNILVGLCKFGRIESAVEVFHEMCSANLVPTKSAVNFLIGQLCRLNTNEECLERVRVRNF 180
           SN++VGLCK GR+ESA+E+F  M    ++PT+SAVN LIG+LC ++  E  +E+VRVRN 
Sbjct: 34  SNMIVGLCKLGRLESALEIFDRMNRIGVLPTRSAVNLLIGELCLMSGKEGSVEKVRVRNT 93

Query: 181 RRPFTILVPNVGLDGGAILAAVKIFWLMGDLGLFPSPFIINQLISELCRLRKIDEAMEIF 360
           RRP+TILVPN+G + GAI  AV++FW +   GL PS F++ +L+SELCRL    EA+ + 
Sbjct: 94  RRPYTILVPNMGGNSGAIQPAVQVFWAVCSSGLLPSAFVVVKLMSELCRLGNTVEAVRVL 153

Query: 361 WVVEKKRLNCLEESYTIVIRALCDVRRVEEACQLFGQMLSQELKPKLVLYNSLICMLCKL 540
            +VE+++L  ++E Y++VI ALC+  RVEEA  LFG+MLS  LKPKLV+YNS+I MLCK 
Sbjct: 154 RIVEERKLTSVQEGYSVVINALCECCRVEEASDLFGRMLSCGLKPKLVVYNSVISMLCKF 213

Query: 541 GNVDKADRLFEIMNKRRCGPDNVTYTALIHGYG 639
           G +  A R+FEIMNK RC PD +TYTALIH +G
Sbjct: 214 GKLKDATRVFEIMNKNRCLPDGLTYTALIHSHG 246


>ref|XP_003624339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355499354|gb|AES80557.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 578

 Score =  236 bits (603), Expect = 2e-60
 Identities = 114/210 (54%), Positives = 162/210 (77%)
 Frame = +1

Query: 1   SNILVGLCKFGRIESAVEVFHEMCSANLVPTKSAVNFLIGQLCRLNTNEECLERVRVRNF 180
           SN++VGLC+ GR E+A+E+F +M    + PT+SA+N LIG LC ++  E  +E+V+V   
Sbjct: 245 SNMIVGLCRLGRFEAALEIFRKMDRVGVHPTRSAMNVLIGDLCLMSAKEGSVEKVKVTKT 304

Query: 181 RRPFTILVPNVGLDGGAILAAVKIFWLMGDLGLFPSPFIINQLISELCRLRKIDEAMEIF 360
           RRP++ILVPN+G +  AI  AV++F  + + GL PS F++ +L+SELCRL   +EA+++ 
Sbjct: 305 RRPYSILVPNMGGNRAAIQPAVEVFSAVVNSGLLPSTFVVFRLMSELCRLGNTEEAVKVL 364

Query: 361 WVVEKKRLNCLEESYTIVIRALCDVRRVEEACQLFGQMLSQELKPKLVLYNSLICMLCKL 540
            +VE+K+L C++E Y+IVI+ALCD RRVEEA +LFG+ML   LKPKLV+YNS+I MLCKL
Sbjct: 365 RIVEEKKLTCVQEGYSIVIKALCDHRRVEEAGKLFGRMLEIGLKPKLVVYNSVISMLCKL 424

Query: 541 GNVDKADRLFEIMNKRRCGPDNVTYTALIH 630
           G++D A+ +FEIMNK RC PD++TY ALIH
Sbjct: 425 GDLDNANGVFEIMNKNRCFPDSITYIALIH 454



 Score = 72.0 bits (175), Expect = 9e-11
 Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 7/184 (3%)
 Frame = +1

Query: 37  IESAVEVFHEMCSANLVPTKSAVNFLIGQLCRLNTNEECLERVRVRNFRRPFTI-----L 201
           I+ AVEVF  + ++ L+P+   V  L+ +LCRL   EE ++ +R+   ++   +     +
Sbjct: 322 IQPAVEVFSAVVNSGLLPSTFVVFRLMSELCRLGNTEEAVKVLRIVEEKKLTCVQEGYSI 381

Query: 202 VPNVGLDGGAILAAVKIFWLMGDLGLFPSPFIINQLISELCRLRKIDEAMEIFWVVEKKR 381
           V     D   +  A K+F  M ++GL P   + N +IS LC+L  +D A  +F ++ K R
Sbjct: 382 VIKALCDHRRVEEAGKLFGRMLEIGLKPKLVVYNSVISMLCKLGDLDNANGVFEIMNKNR 441

Query: 382 LNCLEES--YTIVIRALCDVRRVEEACQLFGQMLSQELKPKLVLYNSLICMLCKLGNVDK 555
             C  +S  Y  +I A C  +  + A +L  +ML     P    YN +  +L +   +D 
Sbjct: 442 --CFPDSITYIALIHAQCACKNWKVAYELLMEMLGLGWIPHFHTYNLVDSLLREHDQLDL 499

Query: 556 ADRL 567
             +L
Sbjct: 500 CHKL 503