BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029824
         (473 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003612651.1| Replication factor A protein [Medicago trunc...    76   2e-12
ref|XP_003606911.1| Replication factor A 51 kDa subunit [Medicag...    76   2e-12
ref|XP_003627854.1| Helicase-like protein [Medicago truncatula] ...    64   1e-08
dbj|BAJ99393.1| predicted protein [Hordeum vulgare subsp. vulgare]     63   2e-08
ref|XP_002437006.1| hypothetical protein SORBIDRAFT_10g016776 [S...    62   6e-08

>ref|XP_003612651.1| Replication factor A protein [Medicago truncatula]
           gi|355513986|gb|AES95609.1| Replication factor A protein
           [Medicago truncatula]
          Length = 477

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 7/148 (4%)
 Frame = +3

Query: 45  TINQLKEMGKDQLYKGSS-YTCSAIIDKVYSTNW-FYNCCKRCFKTIAQTEPNTRCPKC- 215
           TI++L  M    +Y+G   Y C A +D +   N  +Y  C  C KT++ TE +  C  C 
Sbjct: 260 TISELLSMAVSGVYQGDVVYNCVATVDDILLKNGLYYVSCPHCRKTVSSTETDFNCEHCT 319

Query: 216 -KVDTEK-RYKLRFAVNDFSDITTLVAFNKHAENLVKKPVEEL--DIIHKDASPKALQNE 383
            KVD  K RY+L   VND ++ T  V F + AE L +  +++L  D+ ++      L  +
Sbjct: 320 KKVDYPKIRYRLELQVNDSTESTIFVLFAEVAEQLAQLKLDDLTPDLENQTGRDSDLPKQ 379

Query: 384 LGKLEGKSYTFQVQITEFSSKDGFESFT 467
           L  + G  + FQV+++ +  + G +SFT
Sbjct: 380 LQHIIGSKHIFQVKLSSYFERRGVQSFT 407


>ref|XP_003606911.1| Replication factor A 51 kDa subunit [Medicago truncatula]
           gi|357477581|ref|XP_003609076.1| Replication factor A 51
           kDa subunit [Medicago truncatula]
           gi|357477673|ref|XP_003609122.1| Replication factor A 51
           kDa subunit [Medicago truncatula]
           gi|355507966|gb|AES89108.1| Replication factor A 51 kDa
           subunit [Medicago truncatula]
           gi|355510131|gb|AES91273.1| Replication factor A 51 kDa
           subunit [Medicago truncatula]
           gi|355510177|gb|AES91319.1| Replication factor A 51 kDa
           subunit [Medicago truncatula]
          Length = 502

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 7/148 (4%)
 Frame = +3

Query: 45  TINQLKEMGKDQLYKGSS-YTCSAIIDKVYSTNW-FYNCCKRCFKTIAQTEPNTRCPKC- 215
           TI++L  M    +Y+G   Y C A +D +   N  +Y  C  C KT++ TE +  C  C 
Sbjct: 292 TISELLSMAVSGVYQGDVVYNCVATVDDILLKNGLYYVSCPHCRKTVSSTETDFNCEHCT 351

Query: 216 -KVDTEK-RYKLRFAVNDFSDITTLVAFNKHAENLVKKPVEEL--DIIHKDASPKALQNE 383
            KVD  K RY+L   VND ++ T  V F + AE L +  +++L  D+ ++      L  +
Sbjct: 352 KKVDYPKIRYRLELQVNDSTESTIFVLFAEVAEQLAQLKLDDLTPDLENQTGRDSDLPKQ 411

Query: 384 LGKLEGKSYTFQVQITEFSSKDGFESFT 467
           L  + G  + FQV+++ +  + G +SFT
Sbjct: 412 LQHIIGSKHIFQVKLSSYFERRGVQSFT 439


>ref|XP_003627854.1| Helicase-like protein [Medicago truncatula]
           gi|355521876|gb|AET02330.1| Helicase-like protein
           [Medicago truncatula]
          Length = 622

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 5/146 (3%)
 Frame = +3

Query: 45  TINQLKEMGKDQLYKGSSYTCSAIIDKVYSTNW-FYNCCKRCFKTIAQTEPNTRCPKC-- 215
           TI++L  MG         Y C A +D +   N  +Y  C  C KT++ TE +  C  C  
Sbjct: 42  TISELLSMGD------VVYNCVATVDDILLKNGLYYISCPHCRKTVSSTETDFNCEYCTK 95

Query: 216 KVDTEK-RYKLRFAVNDFSDITTLVAFNKHAENLVKKPVEELDI-IHKDASPKALQNELG 389
           KVD  K RY+L    ND +  T  V F + AE L +  +++L   +        L  +L 
Sbjct: 96  KVDYLKIRYRLELPFNDSTKSTIFVLFAEVAEQLAQLKLDDLTPDLENTGRDSNLPKQLQ 155

Query: 390 KLEGKSYTFQVQITEFSSKDGFESFT 467
            + G  + FQV+++ +  + G +SFT
Sbjct: 156 HIIGSKHIFQVKLSSYFERRGIQSFT 181


>dbj|BAJ99393.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 333

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
 Frame = +3

Query: 132 STNWFYNCCKRCFKTIAQTEPNTRCPKCKVDTEK---RYKLRFAVNDFSDITTLVAFNKH 302
           S  W+Y  C++C K + +   +  CPKC+ + E    RYKL+  + D S  TT   F   
Sbjct: 8   SDEWYYIGCRKCNKKVQKQGNHFYCPKCEKEPENTCPRYKLKLEICDLSATTTCTMFEAE 67

Query: 303 AENLVKKPVEELDIIHKDASPKALQNELGKLEGKSYTFQVQITEFSSKDGFESFTI 470
           A+ L+K+    L I   D        ++ K+ G+   FQ ++ +++ K G++ +T+
Sbjct: 68  AKKLIKQSASFL-IDRDDFDIHEQTKQIQKICGQKLIFQFKLNDYNLKYGYQEYTV 122


>ref|XP_002437006.1| hypothetical protein SORBIDRAFT_10g016776 [Sorghum bicolor]
            gi|241915229|gb|EER88373.1| hypothetical protein
            SORBIDRAFT_10g016776 [Sorghum bicolor]
          Length = 958

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
 Frame = +3

Query: 84   YKGSSYTCSAIIDKVYSTNWFYNCCKRCFKTIAQTEPNTRCPKCKVDT----EKRYKLRF 251
            YK + +  +  + K+   +W+YN CK+C KT      + RC + K  T      RYKL  
Sbjct: 742  YKKTEWLVTVTVQKI-DKSWWYNACKKCLKTARPFHDSFRCTEPKCGTIGVPVPRYKLCI 800

Query: 252  AVNDFSDITTLVAFNKHAENLVKKPVEELDIIHKDASPKALQNELGKLEGKSYTFQVQIT 431
            +  D +  T  V F + A+ L +KPV   D +  D     + +E+ +L  K + + V  T
Sbjct: 801  SAGDETGDTEFVIFGRIAQRLTRKPV---DTLIADNPTGFIPDEVTRLLEKVFVWNVSFT 857

Query: 432  EFSSKDGFESFTI 470
            E +   G  SF +
Sbjct: 858  ENTIATGIVSFQV 870