BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029822
         (1229 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281426.1| PREDICTED: eukaryotic translation initiation...   260   6e-67
ref|XP_002531589.1| Eukaryotic translation initiation factor 3 s...   253   9e-65
ref|XP_002306956.1| predicted protein [Populus trichocarpa] gi|2...   251   2e-64
ref|XP_004159873.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic t...   251   3e-64
ref|XP_004146257.1| PREDICTED: eukaryotic translation initiation...   250   5e-64

>ref|XP_002281426.1| PREDICTED: eukaryotic translation initiation factor 3 subunit C-like
            [Vitis vinifera]
          Length = 946

 Score =  260 bits (664), Expect = 6e-67
 Identities = 158/364 (43%), Positives = 220/364 (60%), Gaps = 36/364 (9%)
 Frame = -3

Query: 984  DLEWDSDDDGNKYEKPE--GENWVKEMDRLNR-----FFADPTNVITWDTINKMFR---A 835
            D E D +D  ++ +     G  W K+M + ++     F  DP+  ITWDT+NK F+   A
Sbjct: 208  DSEEDEEDGEDREDSAAEAGGGWEKKMSKKDKLMDKQFMKDPSE-ITWDTVNKKFKEIVA 266

Query: 834  TAGRKGKGMLEEIEQLTLLAHFGKTPAQKVEILVYVIAVVQLQVLPC--GHVPVAVLKNC 661
              GRKG G +E++EQLT L    KTPAQK+EIL  V++  Q  V P   GH+P+ V K C
Sbjct: 267  VRGRKGTGRIEQVEQLTFLTRVAKTPAQKLEILFSVVSA-QFDVNPSLSGHMPINVWKKC 325

Query: 660  VQNMLVVMDILEDNLNVVLDDSLE----FMRETSDREGVVHVWRRNLPELYAQLLFEYSI 493
            VQNMLV++DIL  + N+++DD +E      ++ +D +G + VW  NL     ++  E+  
Sbjct: 326  VQNMLVILDILVQHSNILVDDVVEPEENETQKGADYKGTIRVWG-NLVAFLERIDVEFFK 384

Query: 492  TLKSVKPSSPAYKEMLRCEPVFFLLSQTVLDYLQRRNDFGAAAIVAFRMVQVLYYKPHQA 313
            +L+ + P +  Y E LR EP+F +L+Q V DYL+R  DF AA+ VA R V+++YYKP + 
Sbjct: 385  SLQCIDPHTREYVERLRDEPLFLVLAQNVQDYLERVGDFKAASKVALRRVELIYYKPQEV 444

Query: 312  YDAMRKHVQQSENVYWW----------------PTTSVNFKHVHQRPTFPDNCRELIDEL 181
            YDAM+   +Q+E+                    P   V  + V ++PTFP+N R L+D L
Sbjct: 445  YDAMKNLAEQTEDTENGESEAGEEPRVEESRGPPAFVVTPEVVPRKPTFPENSRTLMDIL 504

Query: 180  LALINKHGDETTKHCAMIFDIYHHAINDEFSKSRDLLLVSHLEDT----DDFTQIFFNRA 13
            ++LI  HGDE TK  AM+ DIYHHAI DEFS +RDLLL+SHL+D     D  TQI FNRA
Sbjct: 505  VSLIYNHGDERTKARAMLCDIYHHAILDEFSTARDLLLMSHLQDNVQHMDISTQILFNRA 564

Query: 12   MAQL 1
            MAQL
Sbjct: 565  MAQL 568


>ref|XP_002531589.1| Eukaryotic translation initiation factor 3 subunit, putative [Ricinus
            communis] gi|223528785|gb|EEF30792.1| Eukaryotic
            translation initiation factor 3 subunit, putative
            [Ricinus communis]
          Length = 619

 Score =  253 bits (645), Expect = 9e-65
 Identities = 161/358 (44%), Positives = 216/358 (60%), Gaps = 30/358 (8%)
 Frame = -3

Query: 984  DLEWDSDDDGNKYEKPEGENWVKEMDRLNR-----FFADPTNVITWDTINKMFR---ATA 829
            D E D D   N+ E  EG+ W K M + ++     F  DP+  ITWDT+NK F+   A  
Sbjct: 206  DEEEDEDRQDNQTEL-EGD-WQKMMSKKDKLMDRQFMKDPSE-ITWDTVNKKFKEVVAAR 262

Query: 828  GRKGKGMLEEIEQLTLLAHFGKTPAQKVEILVYVIAVVQLQVLP--CGHVPVAVLKNCVQ 655
            GRKG G  E++EQLT L    KTPAQK+EIL  V++  Q  V P   GH+P+ V K CVQ
Sbjct: 263  GRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSA-QFDVNPGLSGHMPINVWKKCVQ 321

Query: 654  NMLVVMDILEDNLNVVLDDSLEFMRETS----DREGVVHVWRRNLPELYAQLLFEYSITL 487
            NMLV++DIL    N+V+DD +E     S    D  G + VW  NL     ++  E+  +L
Sbjct: 322  NMLVILDILVQYPNIVVDDMVEPDENESQKGVDYNGTIRVWG-NLVAFLERIDTEFFKSL 380

Query: 486  KSVKPSSPAYKEMLRCEPVFFLLSQTVLDYLQRRNDFGAAAIVAFRMVQVLYYKPHQAYD 307
            + + P +  Y E L+ EP+F  L+Q V +YL+R  DF AA+ VA R V+++YYKP + YD
Sbjct: 381  QCIDPHTREYVERLQDEPMFLALAQNVQEYLERVGDFKAASKVALRRVELIYYKPQEVYD 440

Query: 306  AMRKHVQQSE-NVYWWPTTSVNFKH-----------VHQRPTFPDNCRELIDELLALINK 163
            AMRK  +Q++ N      T V               V ++PTFP++ R ++D L++LI K
Sbjct: 441  AMRKLAEQTDDNEKSGVETKVEESRGPSAFVATPELVPRKPTFPESSRTMMDLLVSLIYK 500

Query: 162  HGDETTKHCAMIFDIYHHAINDEFSKSRDLLLVSHLEDT----DDFTQIFFNRAMAQL 1
            +GDE TK  AM+ DIYHHA+ DEFS SRDLLL+SHL+D+    D  TQI FNRAMAQL
Sbjct: 501  YGDERTKARAMLCDIYHHALLDEFSTSRDLLLMSHLQDSIHHMDISTQILFNRAMAQL 558


>ref|XP_002306956.1| predicted protein [Populus trichocarpa] gi|222856405|gb|EEE93952.1|
            predicted protein [Populus trichocarpa]
          Length = 897

 Score =  251 bits (642), Expect = 2e-64
 Identities = 153/367 (41%), Positives = 218/367 (59%), Gaps = 37/367 (10%)
 Frame = -3

Query: 990  EFDLEWDSD---------DDGNKYEKPEGENWVKEMDR----LNRFFADPTNVITWDTIN 850
            E DLE++ D         ++G   +  +   W K M +    +++ FA   + ITWD +N
Sbjct: 189  ESDLEFEEDPSKIVISDEEEGVNDQSEKDGGWEKMMSKKDKLMDKQFAKDPSEITWDIVN 248

Query: 849  KMFR---ATAGRKGKGMLEEIEQLTLLAHFGKTPAQKVEILVYVIAVVQLQVLP--CGHV 685
            K F+   A  GR+G G  E++EQLT L    KTPAQK+EIL  V++  Q  V P   GH+
Sbjct: 249  KKFKEIVAARGRRGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSA-QFDVNPGLSGHM 307

Query: 684  PVAVLKNCVQNMLVVMDILEDNLNVVLDDSLE----FMRETSDREGVVHVWRRNLPELYA 517
            P+ V KNCVQNMLV++DIL    N+V+DD++E      ++ +D  G + +W  NL     
Sbjct: 308  PIHVWKNCVQNMLVILDILVQYPNIVVDDTVEPDENETQKGADHNGPIQIWG-NLVAFLE 366

Query: 516  QLLFEYSITLKSVKPSSPAYKEMLRCEPVFFLLSQTVLDYLQRRNDFGAAAIVAFRMVQV 337
            ++  E+  +L+ + P +  Y E L+ EP+F +L+Q V +YL+R  D  AAA VA R V++
Sbjct: 367  RMDIEFFKSLQCIDPHAREYIERLQDEPMFLVLAQNVQEYLERVGDLKAAAKVALRRVEL 426

Query: 336  LYYKPHQAYDAMRKHVQQSENVYWWPTTSVNFKH-----------VHQRPTFPDNCRELI 190
            +YYKP + YDAMRK  +Q+E+        V               V ++PTFP+N R ++
Sbjct: 427  IYYKPQEVYDAMRKLAEQTEDGGNGEEPKVEESRGSSAFVNTPELVPRKPTFPENSRTMM 486

Query: 189  DELLALINKHGDETTKHCAMIFDIYHHAINDEFSKSRDLLLVSHLEDT----DDFTQIFF 22
            D L++LI K GDE TK  AM+ DIYHHA+ DEF+ SRDLLL+SHL+D     D  +QI F
Sbjct: 487  DALVSLIYKSGDERTKARAMLCDIYHHALLDEFATSRDLLLMSHLQDNIQHMDISSQILF 546

Query: 21   NRAMAQL 1
            NRAMAQL
Sbjct: 547  NRAMAQL 553


>ref|XP_004159873.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation
            factor 3 subunit C-like [Cucumis sativus]
          Length = 939

 Score =  251 bits (641), Expect = 3e-64
 Identities = 156/357 (43%), Positives = 217/357 (60%), Gaps = 27/357 (7%)
 Frame = -3

Query: 990  EFDLEWDSDDDGNKYEKPEGENWVKEMDRLNRFFADPTNVITWDTINKMFR---ATAGRK 820
            + D E D DD    +EK + +   K MD+  +F  DP+  ITWDT+NK F+   A  GRK
Sbjct: 213  DIDEEEDLDDPSQNWEKKKSKKX-KLMDK--QFMKDPSE-ITWDTVNKKFKEVVAARGRK 268

Query: 819  GKGMLEEIEQLTLLAHFGKTPAQKVEILVYVIAVVQLQVLP--CGHVPVAVLKNCVQNML 646
            G G  E++EQLT L    KTPAQK+EIL  V++  Q  V P   GH+P++V K CVQNML
Sbjct: 269  GTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSA-QFDVNPGLSGHMPISVWKKCVQNML 327

Query: 645  VVMDILEDNLNVVLDDSLE----FMRETSDREGVVHVWRRNLPELYAQLLFEYSITLKSV 478
             ++DIL  N N+V+DD +E      ++ +D +G + VW  NL     ++  E+  +L+ +
Sbjct: 328  SIIDILVQNPNIVVDDMVEPDENESQKPADYKGTIRVWG-NLVAFVERIDTEFFKSLQCI 386

Query: 477  KPSSPAYKEMLRCEPVFFLLSQTVLDYLQRRNDFGAAAIVAFRMVQVLYYKPHQAYDAMR 298
             P +  Y E LR EP+F +L+Q V  YL+R  D+ AA+ VA R V+++YYKP + YDAMR
Sbjct: 387  DPHTREYVERLRDEPMFMVLAQNVQGYLERVGDYKAASKVALRRVELIYYKPQEVYDAMR 446

Query: 297  KHVQQSENVYWWPTTS--------------VNFKHVHQRPTFPDNCRELIDELLALINKH 160
            K  + SE+     +                V  + V ++PTFP++ R  +D L+ LI ++
Sbjct: 447  KLAELSEDDGGDASDEAKVVEESRGPAAFIVTPELVPRKPTFPESSRAFMDILVTLIYQY 506

Query: 159  GDETTKHCAMIFDIYHHAINDEFSKSRDLLLVSHLEDT----DDFTQIFFNRAMAQL 1
            GDE TK  AM+ DIYHHA+ DEF  SRDLLL+SHL+D+    D  TQI FNRAMAQL
Sbjct: 507  GDERTKARAMLCDIYHHALLDEFYISRDLLLMSHLQDSIQHLDISTQILFNRAMAQL 563


>ref|XP_004146257.1| PREDICTED: eukaryotic translation initiation factor 3 subunit C-like
            [Cucumis sativus]
          Length = 939

 Score =  250 bits (639), Expect = 5e-64
 Identities = 158/378 (41%), Positives = 221/378 (58%), Gaps = 54/378 (14%)
 Frame = -3

Query: 972  DSDDDGNKYE----------KPE------------GENWVKEMDRLNR-----FFADPTN 874
            D DD+G++YE          +PE             +NW K+  + N+     F  DP+ 
Sbjct: 189  DDDDEGSEYEDDPSKIMSDSEPEPDIDEEEDLDDPSQNWEKKKSKKNKLMDKQFMKDPSE 248

Query: 873  VITWDTINKMFR---ATAGRKGKGMLEEIEQLTLLAHFGKTPAQKVEILVYVIAVVQLQV 703
             ITWDT+NK F+   A  GRKG G  E++EQLT L    KTPAQK+EIL  V++  Q  V
Sbjct: 249  -ITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSA-QFDV 306

Query: 702  LP--CGHVPVAVLKNCVQNMLVVMDILEDNLNVVLDDSLE----FMRETSDREGVVHVWR 541
             P   GH+P++V K CVQNML ++DIL  N N+V+DD +E      ++ +D +G + VW 
Sbjct: 307  NPGLSGHMPISVWKKCVQNMLSIIDILVQNPNIVVDDMVEPDENESQKPADYKGTIRVWG 366

Query: 540  RNLPELYAQLLFEYSITLKSVKPSSPAYKEMLRCEPVFFLLSQTVLDYLQRRNDFGAAAI 361
             NL     ++  E+  +L+ + P +  Y E LR EP+F +L+Q V  YL+R  D+ AA+ 
Sbjct: 367  -NLVAFVERIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQGYLERVGDYKAASK 425

Query: 360  VAFRMVQVLYYKPHQAYDAMRKHVQQSENVYWWPTTS--------------VNFKHVHQR 223
            VA R V+++YYKP + YDAMRK  + SE+     +                V  + V ++
Sbjct: 426  VALRRVELIYYKPQEVYDAMRKLAELSEDDGGDASDEAKVVEESRGPAAFIVTPELVPRK 485

Query: 222  PTFPDNCRELIDELLALINKHGDETTKHCAMIFDIYHHAINDEFSKSRDLLLVSHLEDT- 46
            PTFP++ R  +D L+ LI ++GDE TK  AM+ DIYHHA+ DEF  SRDLLL+SHL+D+ 
Sbjct: 486  PTFPESSRAFMDILVTLIYQYGDERTKARAMLCDIYHHALLDEFYISRDLLLMSHLQDSI 545

Query: 45   ---DDFTQIFFNRAMAQL 1
               D  TQI FNRAMAQL
Sbjct: 546  QHLDISTQILFNRAMAQL 563