BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029809
         (870 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containi...   214   3e-53
emb|CBI36352.3| unnamed protein product [Vitis vinifera]              123   3e-31
ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containi...   122   1e-25
ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containi...   110   3e-25
ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containi...    94   1e-23

>ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  214 bits (544), Expect = 3e-53
 Identities = 123/253 (48%), Positives = 165/253 (65%), Gaps = 18/253 (7%)
 Frame = -1

Query: 705 LNVPNPQESSSLFFQMRLRDGIVVDSFSLSLVLQARGRSVDVDYTSGRRVHTHLVKLGFA 526
           LN  NPQES SLFFQMR ++ I +DS+SLSLV+QA GR  D    +G+++HT ++K+G  
Sbjct: 80  LNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPG--NGQKLHTQVLKIGLG 137

Query: 525 SNLFGQTALIEMYVKLGTVDVAKNILDQ---SDMVSYNVLLAECVRIGKVDLARQLFDKM 355
           S+LF +TALIEMY K G +++A+NILD+    D+V YNVLLAE VR+G+++LA  LFD+M
Sbjct: 138 SDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRM 197

Query: 354 PAIGFLEYHDS*ICNMR*CGYC*AIVRYEF*ERLGFLELDDCRLCQNQAI**S------- 196
           P    + ++               I  +     +G  +    R C+   I  S       
Sbjct: 198 PERDLVSWNT-------------MIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYA 244

Query: 195 --------INTIHDMQSANVRPDRVTMVSVLSACGDLGALGMGKIVHEYIDRNKVEIDMK 40
                   +   H+MQ ANV PD+VTMVSVLSACGD+GALGMGK++HE I+RN++EID+K
Sbjct: 245 KARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLK 304

Query: 39  LGTSLVDMYAKCG 1
           LGTSLVDMYAKCG
Sbjct: 305 LGTSLVDMYAKCG 317



 Score = 89.0 bits (219), Expect = 1e-15
 Identities = 44/64 (68%), Positives = 51/64 (79%)
 Frame = -2

Query: 869 KTSLSENNFILAKLLRQIFSC*SLKNLQYARSIFDEIQSPDTFIWNTMIQAYLNS*MSQT 690
           KTSL  NNF+LAKLLR++F+C S  +L YARS+FDEI SPDTFIWNTMI+AYLNS   Q 
Sbjct: 28  KTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYLNSQNPQE 87

Query: 689 PKSL 678
             SL
Sbjct: 88  SMSL 91


>emb|CBI36352.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  123 bits (308), Expect(2) = 3e-31
 Identities = 78/251 (31%), Positives = 138/251 (54%), Gaps = 21/251 (8%)
 Frame = -1

Query: 690 PQESSSLFFQMRLRDGIVVDSFSLSLVLQARGRSVDVDYTSGRRVHTHLVKLGFASNLFG 511
           P  + S++ +M L  G++ D ++   +L+   R  D     GR +H H+VKLGF+SN+F 
Sbjct: 100 PNSAVSMYCEM-LERGVMPDEYTYPFLLKRFTR--DTAVKCGRELHDHIVKLGFSSNVFV 156

Query: 510 QTALIEMYVKLGTVDVAKNILDQS---DMVSYNVLLAECVRIGKVDLARQLFDKMPAIGF 340
           Q ALI +Y   G V VA+ + D+S   D+V++NV+++   R  + D + +LFD+M  +  
Sbjct: 157 QNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRV 216

Query: 339 LEYHDS*ICNMR*CGYC*AI-----VRYEF*ERL-------------GFLELDDCRLCQN 214
           L    + +  +  C     +     V   + +++             G+L+++  +    
Sbjct: 217 LPSSITLVSVLSACSKLKDLNVGKRVHRNYFDKMPERDFVSWTAMIDGYLQVNRFKEV-- 274

Query: 213 QAI**SINTIHDMQSANVRPDRVTMVSVLSACGDLGALGMGKIVHEYIDRNKVEIDMKLG 34
                 ++   +MQ+AN++PD  TMVS+L+AC  LGAL +G+ +  YID+N+++ID  +G
Sbjct: 275 ------LSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVG 328

Query: 33  TSLVDMYAKCG 1
            +L+DMY  CG
Sbjct: 329 NALIDMYFNCG 339



 Score = 38.9 bits (89), Expect(2) = 3e-31
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = -2

Query: 866 TSLSENNFILAKLLRQIFSC*-SLKNLQYARSIFDEIQSPDTFIWNTMIQAY 714
           T L  N  + A+++   F C   L +++YAR +FD +  P+ F+WN MI+ Y
Sbjct: 45  TGLISNPIVPAQIIA--FCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGY 94


>ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  122 bits (306), Expect = 1e-25
 Identities = 85/257 (33%), Positives = 133/257 (51%), Gaps = 23/257 (8%)
 Frame = -1

Query: 702 NVPNPQESSSLFFQMRLRDGIVVDSFSLSLVLQARGRSVDVDYTSGRRVHTHLVKLGFAS 523
           N P P+ + ++F QM L   ++ D ++ +  L++ G    V+   GR++H H++K G   
Sbjct: 85  NSPTPEAALTIFHQM-LHASVLPDKYTFTFALKSCGSFSGVE--EGRQIHGHVLKTGLGD 141

Query: 522 NLFGQTALIEMYVKLGTVDVAKNILD---QSDMVSYNVLLAECVRIGKVDLARQLFDKMP 352
           +LF Q  LI +Y   G ++ A+++LD   + D+VS+N LL+     G ++LA  LFD+M 
Sbjct: 142 DLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMT 201

Query: 351 ---------------AIGFLE-----YHDS*ICNMR*CGYC*AIVRYEF*ERLGFLELDD 232
                           +G LE     + ++ + N+    +   I  Y    R  F E+  
Sbjct: 202 ERNVESWNFMISGYVGVGLLEEARRVFGETPVKNV--VSWNAMITGYSHAGR--FSEV-- 255

Query: 231 CRLCQNQAI**SINTIHDMQSANVRPDRVTMVSVLSACGDLGALGMGKIVHEYIDRNKVE 52
                       +    DMQ A V+PD  T+VSVLSAC  +GAL  G+ VH YID+N + 
Sbjct: 256 ------------LVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGIS 303

Query: 51  IDMKLGTSLVDMYAKCG 1
           ID  + T+LVDMY+KCG
Sbjct: 304 IDGFVATALVDMYSKCG 320


>ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  110 bits (275), Expect(2) = 3e-25
 Identities = 78/252 (30%), Positives = 125/252 (49%), Gaps = 21/252 (8%)
 Frame = -1

Query: 693 NPQESSSLFFQMRLRDGIVVDSFSLSLVLQARGRSVDVDYTSGRRVHTHLVKLGFASNLF 514
           NP+++   +  MR R G+ ++ F+   VL+A G  +   Y  GR VH  LVK+GF  ++F
Sbjct: 106 NPEKALEFYGLMRQR-GVELNKFTFLFVLKAYG--LRPSYQEGRIVHGKLVKVGFCYDVF 162

Query: 513 GQTALIEMYVKLGTVDVAKNILDQ---SDMVSYNVLLAECVRIGKVDLARQLFDKMPAIG 343
            + ALI MY+K G++  A  + D+    ++V++N ++  C   G  + AR+LF +MP   
Sbjct: 163 TRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEMPERN 222

Query: 342 FLEYHDS*ICNMR*CGYC*AIVRYEF*ERLGFLELDD------------------CRLCQ 217
              +      N    GY           +LG +++                        Q
Sbjct: 223 VGSW------NAVVGGY----------SKLGHVDIARSLFDLMPERDVVSWGSMISAYVQ 266

Query: 216 NQAI**SINTIHDMQSANVRPDRVTMVSVLSACGDLGALGMGKIVHEYIDRNKVEIDMKL 37
           N     ++    +M  A V  D + + S+LSAC  +GAL MG+ +H Y+ R+K+  D+ L
Sbjct: 267 NGRAAEALELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFL 326

Query: 36  GTSLVDMYAKCG 1
            T+LVDMYAKCG
Sbjct: 327 DTALVDMYAKCG 338



 Score = 31.6 bits (70), Expect(2) = 3e-25
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 803 SLKNLQYARSIFDEIQSPDTFIWNTMIQAYLNS 705
           S +N+ YA  +F  I  PD++ W TMI+ ++ +
Sbjct: 72  SARNIDYAFWVFVGINYPDSYSWTTMIRGFVEA 104



 Score = 50.1 bits (118), Expect(2) = 2e-06
 Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
 Frame = -1

Query: 684 ESSSLFFQMRLRDGIVVDSFSLSLVLQARGRSVDVDYTSGRRVHTHLVKLGFASNLFGQT 505
           E+  LF +M L  G+  DS  ++ +L A  +   +D   GR +H ++ +    +++F  T
Sbjct: 272 EALELFKEMMLA-GVSADSIIITSILSACAQIGALDM--GRWIHAYMKRSKLRNDVFLDT 328

Query: 504 ALIEMYVKLGTVDVA---KNILDQSDMVSYNVLLAECVRIGKVDLARQLFDKMPAIG 343
           AL++MY K G +D A    N + + ++ S+N +L+     G    A +LF +M + G
Sbjct: 329 ALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTG 385



 Score = 28.5 bits (62), Expect(2) = 2e-06
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 800 LKNLQYARSIFDEIQSPDTFIWNTMIQAYLNS 705
           L ++  ARS+FD +   D   W +MI AY+ +
Sbjct: 236 LGHVDIARSLFDLMPERDVVSWGSMISAYVQN 267


>ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score = 94.4 bits (233), Expect(2) = 1e-23
 Identities = 72/250 (28%), Positives = 115/250 (46%), Gaps = 39/250 (15%)
 Frame = -1

Query: 633 DSFSLSLVLQARGRSVDVDYTSGRRVHTHLVKLGFASNLFGQTALIEMYVKLGTVDVAKN 454
           D+F+L  V++   R   V    G+++H   +K+GF S++F Q +L+ MY K G +D A+ 
Sbjct: 111 DNFTLPCVIKGCARLGVVQ--EGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARK 168

Query: 453 ILD----------------------------------QSDMVSYNVLLAECVRIGKVDLA 376
           + D                                  + D  S+ VL+    + GKV+ A
Sbjct: 169 VFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESA 228

Query: 375 RQLFDKMPAIGFLEYHDS*ICNMR*CGYC*AIVRYEF*ERLGFLELDDCRLC-----QNQ 211
           R+LFD+MP    + ++      M+   +  A+   E   ++   +L    L       N 
Sbjct: 229 RKLFDQMPCRNLVSWNAMINGYMKSGDFDSAL---ELFYQMPIWDLVTWNLMIAGYELNG 285

Query: 210 AI**SINTIHDMQSANVRPDRVTMVSVLSACGDLGALGMGKIVHEYIDRNKVEIDMKLGT 31
               ++     M     RP   T+VSVLSA   L  LG G+ +H Y+++N  E+D  LGT
Sbjct: 286 QFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGT 345

Query: 30  SLVDMYAKCG 1
           SL++MYAKCG
Sbjct: 346 SLIEMYAKCG 355



 Score = 42.4 bits (98), Expect(2) = 1e-23
 Identities = 24/66 (36%), Positives = 38/66 (57%)
 Frame = -2

Query: 869 KTSLSENNFILAKLLRQIFSC*SLKNLQYARSIFDEIQSPDTFIWNTMIQAYLNS*MSQT 690
           KT++  + F+ ++LL  ++S   + +L YARSIFD IQ      WNT+I+ Y+ +  S  
Sbjct: 38  KTAIFNHPFVSSRLLA-LYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHD 96

Query: 689 PKSLRH 672
              L H
Sbjct: 97  GIVLFH 102