BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029801
         (561 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002323670.1| predicted protein [Populus trichocarpa] gi|2...   204   1e-50
ref|XP_002528689.1| pentatricopeptide repeat-containing protein,...   199   2e-49
ref|XP_003623623.1| Pentatricopeptide repeat-containing protein ...   169   4e-40
gb|EAZ26836.1| hypothetical protein OsJ_10752 [Oryza sativa Japo...   161   8e-38
ref|NP_001050037.1| Os03g0336000 [Oryza sativa Japonica Group] g...   161   8e-38

>ref|XP_002323670.1| predicted protein [Populus trichocarpa] gi|222868300|gb|EEF05431.1|
           predicted protein [Populus trichocarpa]
          Length = 535

 Score =  204 bits (518), Expect = 1e-50
 Identities = 97/184 (52%), Positives = 129/184 (70%)
 Frame = -3

Query: 553 EKDSGFVLSKDLNSLLIDLVEADKIDIAEKLFKESVKCDIIPDSKRFSTMVRCYCKKNEP 374
           +K+ GF    D N +L+ LV A++ D+  KL+       + P+S  FS MVRC+CKK +P
Sbjct: 133 DKEIGFFNISDFNDVLMALVTANESDLVLKLYSGLSCYSLEPNSWTFSIMVRCHCKKKDP 192

Query: 373 LEAKMILDQMVENGFTPHVVIFTDVINSLCVRGRVKIAFEVFEVMSKTGCEPNVQTYNCL 194
            EAK +LDQM++ GF P+V   T +INS C  G+++  F+VFEVM + GC+PN+QTYNCL
Sbjct: 193 GEAKRVLDQMMQKGFNPNVATLTILINSFCKMGQLQNTFQVFEVMDRIGCKPNIQTYNCL 252

Query: 193 MKGLCYVGKVEEAFXXXXXXXXXXXKPDIYTYTAVMDGFCKVGRSDEGMELLEEALADGL 14
           +KG+CYVG+++EAF           +PDIYTYTA+MDGFCKVGRSDE MELL EA+  GL
Sbjct: 253 LKGMCYVGRIDEAFELMEDIKKTTVEPDIYTYTAMMDGFCKVGRSDEAMELLNEAMEMGL 312

Query: 13  KPNV 2
            PNV
Sbjct: 313 APNV 316



 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 43/163 (26%), Positives = 77/163 (47%)
 Frame = -3

Query: 517 NSLLIDLVEADKIDIAEKLFKESVKCDIIPDSKRFSTMVRCYCKKNEPLEAKMILDQMVE 338
           N LL  +    +ID A +L ++  K  + PD   ++ M+  +CK     EA  +L++ +E
Sbjct: 250 NCLLKGMCYVGRIDEAFELMEDIKKTTVEPDIYTYTAMMDGFCKVGRSDEAMELLNEAME 309

Query: 337 NGFTPHVVIFTDVINSLCVRGRVKIAFEVFEVMSKTGCEPNVQTYNCLMKGLCYVGKVEE 158
            G  P+VV F  +++     GR    F V ++M +  C P+  +Y+ L+ GL   GKV  
Sbjct: 310 MGLAPNVVTFNTLLDGYAKEGRPLKGFGVLKLMKQRKCMPDYISYSTLLHGLLLWGKVLA 369

Query: 157 AFXXXXXXXXXXXKPDIYTYTAVMDGFCKVGRSDEGMELLEEA 29
                        + D     +++ G C+  +S +  +L+E A
Sbjct: 370 GLRIFNEMEGSGLEADERLMNSLVRGLCR--KSIKENDLVEVA 410


>ref|XP_002528689.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531861|gb|EEF33678.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 271

 Score =  199 bits (507), Expect = 2e-49
 Identities = 92/177 (51%), Positives = 128/177 (72%)
 Frame = -3

Query: 556 FEKDSGFVLSKDLNSLLIDLVEADKIDIAEKLFKESVKCDIIPDSKRFSTMVRCYCKKNE 377
           F KD       D N LL+ LV A+++D+A  ++ +     ++PDS  FS ++RC+CK+N+
Sbjct: 78  FGKDGEIPSISDFNDLLMALVIANELDLALNMYSDVSTLGLVPDSWTFSIVIRCHCKRND 137

Query: 376 PLEAKMILDQMVENGFTPHVVIFTDVINSLCVRGRVKIAFEVFEVMSKTGCEPNVQTYNC 197
             EAK +LD+M+ENG  P+VV FT +INS C +G+++ A+EV +VM+  GC+PNVQTYNC
Sbjct: 138 ADEAKRVLDRMLENGLNPNVVTFTTLINSFCKKGKLQKAYEVIDVMNTIGCQPNVQTYNC 197

Query: 196 LMKGLCYVGKVEEAFXXXXXXXXXXXKPDIYTYTAVMDGFCKVGRSDEGMELLEEAL 26
           L+KGLCY+GKVEEA+           +PDIYTYTA+MDGFCKVGRS+E M+LL EA+
Sbjct: 198 LLKGLCYIGKVEEAYEILEDIKKSSIEPDIYTYTAMMDGFCKVGRSEEAMQLLNEAI 254



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 43/189 (22%), Positives = 87/189 (46%), Gaps = 5/189 (2%)
 Frame = -3

Query: 553 EKDSGFVLSKDLNSLL----IDLVEADKIDIAEKLFKESVKCDIIPDSKRFSTMVRCYCK 386
           +K   F   KD++ L+    I LVE       ++  +ESVK D      +   ++     
Sbjct: 6   KKKVSFSYPKDISHLIHKQGISLVEKHNGLRIKEQKQESVKFDAKASRLQVEKLLDAI-- 63

Query: 385 KNEPLEAKM-ILDQMVENGFTPHVVIFTDVINSLCVRGRVKIAFEVFEVMSKTGCEPNVQ 209
           +  P + +  ILD   ++G  P +  F D++ +L +   + +A  ++  +S  G  P+  
Sbjct: 64  RALPFKGRTEILDVFGKDGEIPSISDFNDLLMALVIANELDLALNMYSDVSTLGLVPDSW 123

Query: 208 TYNCLMKGLCYVGKVEEAFXXXXXXXXXXXKPDIYTYTAVMDGFCKVGRSDEGMELLEEA 29
           T++ +++  C     +EA             P++ T+T +++ FCK G+  +  E+++  
Sbjct: 124 TFSIVIRCHCKRNDADEAKRVLDRMLENGLNPNVVTFTTLINSFCKKGKLQKAYEVIDVM 183

Query: 28  LADGLKPNV 2
              G +PNV
Sbjct: 184 NTIGCQPNV 192


>ref|XP_003623623.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355498638|gb|AES79841.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  169 bits (427), Expect = 4e-40
 Identities = 84/174 (48%), Positives = 113/174 (64%)
 Frame = -3

Query: 523 DLNSLLIDLVEADKIDIAEKLFKESVKCDIIPDSKRFSTMVRCYCKKNEPLEAKMILDQM 344
           D N LL+ LV A K D  + +F +     ++PDS  +S M+RC+C KNE  EAK +L  +
Sbjct: 113 DFNHLLMALVIAQKPDFCQTMFTKLSSFHLVPDSCTYSIMIRCHCSKNELEEAKRVLFTV 172

Query: 343 VENGFTPHVVIFTDVINSLCVRGRVKIAFEVFEVMSKTGCEPNVQTYNCLMKGLCYVGKV 164
           +ENGF P     T +INSLC RG+VK A EVFE + + G +  VQ YNCL++GL YVG+V
Sbjct: 173 LENGFEPDSATITVLINSLCKRGKVKKAMEVFEFLERKGLKLGVQAYNCLLRGLAYVGRV 232

Query: 163 EEAFXXXXXXXXXXXKPDIYTYTAVMDGFCKVGRSDEGMELLEEALADGLKPNV 2
           +EA              D+Y+Y+AVM+G CKVGRSDE MEL +EA+  GL+P+V
Sbjct: 233 DEAVEILMDMKTGNIGVDVYSYSAVMNGLCKVGRSDEAMELFDEAVGVGLRPDV 286


>gb|EAZ26836.1| hypothetical protein OsJ_10752 [Oryza sativa Japonica Group]
          Length = 523

 Score =  161 bits (407), Expect = 8e-38
 Identities = 81/185 (43%), Positives = 110/185 (59%), Gaps = 1/185 (0%)
 Frame = -3

Query: 553 EKDSGFVLSKDLNSLLIDLVEADKIDIAEKLFKESVKCDIIPDSKRFSTMVRCYCKKNEP 374
           ++D G +   D N +L  L  A   D A  LF+      + PD++ ++T V+C C+K  P
Sbjct: 120 QRDDGALTVSDYNDILSALAMAGDHDSAVALFRALRPNGVTPDAQSYATAVQCLCRKGAP 179

Query: 373 LEAKMILDQMVENGFTPHVVIFTDVINSLCVRGRVKIAFEVFEVMSKTGCEPNVQTYNCL 194
            EAK  LD+MV  GF P V  F+ V+  LC RGRV  A EVF+ M   GCEP ++TYN L
Sbjct: 180 DEAKEALDEMVARGFRPTVATFSAVVGCLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSL 239

Query: 193 MKGLCYVGKVEEAF-XXXXXXXXXXXKPDIYTYTAVMDGFCKVGRSDEGMELLEEALADG 17
           + GLCYVG++EEA              PDIYT+T V+DGFCKVGR+DE   +  +A+ +G
Sbjct: 240 IGGLCYVGRLEEALDLLNKLKESPKQTPDIYTFTIVLDGFCKVGRTDEATPIFHDAVRNG 299

Query: 16  LKPNV 2
           L P +
Sbjct: 300 LSPTI 304


>ref|NP_001050037.1| Os03g0336000 [Oryza sativa Japonica Group]
           gi|108708021|gb|ABF95816.1| expressed protein [Oryza
           sativa Japonica Group] gi|113548508|dbj|BAF11951.1|
           Os03g0336000 [Oryza sativa Japonica Group]
           gi|125543773|gb|EAY89912.1| hypothetical protein
           OsI_11461 [Oryza sativa Indica Group]
           gi|215712300|dbj|BAG94427.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 545

 Score =  161 bits (407), Expect = 8e-38
 Identities = 81/185 (43%), Positives = 110/185 (59%), Gaps = 1/185 (0%)
 Frame = -3

Query: 553 EKDSGFVLSKDLNSLLIDLVEADKIDIAEKLFKESVKCDIIPDSKRFSTMVRCYCKKNEP 374
           ++D G +   D N +L  L  A   D A  LF+      + PD++ ++T V+C C+K  P
Sbjct: 120 QRDDGALTVSDYNDILSALAMAGDHDSAVALFRALRPNGVTPDAQSYATAVQCLCRKGAP 179

Query: 373 LEAKMILDQMVENGFTPHVVIFTDVINSLCVRGRVKIAFEVFEVMSKTGCEPNVQTYNCL 194
            EAK  LD+MV  GF P V  F+ V+  LC RGRV  A EVF+ M   GCEP ++TYN L
Sbjct: 180 DEAKEALDEMVARGFRPTVATFSAVVGCLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSL 239

Query: 193 MKGLCYVGKVEEAF-XXXXXXXXXXXKPDIYTYTAVMDGFCKVGRSDEGMELLEEALADG 17
           + GLCYVG++EEA              PDIYT+T V+DGFCKVGR+DE   +  +A+ +G
Sbjct: 240 IGGLCYVGRLEEALDLLNKLKESPKQTPDIYTFTIVLDGFCKVGRTDEATPIFHDAVRNG 299

Query: 16  LKPNV 2
           L P +
Sbjct: 300 LSPTI 304



 Score = 54.7 bits (130), Expect = 1e-05
 Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 6/162 (3%)
 Frame = -3

Query: 484 KIDIAEKLFKESVKCDIIPDSKRFSTMVRCYCKKNEPLEAKMILDQMVEN-GFTPHVVIF 308
           + D A  +F ++V+  + P    ++ ++  +CK+  PL+A  +L +M  N    P  + F
Sbjct: 284 RTDEATPIFHDAVRNGLSPTIFTYNALLNGHCKEGNPLKAYSLLMEMCGNAACPPDRISF 343

Query: 307 TDVINSLCVRGRVKIAFEVFEVMSKTGCEPNVQTYNCLMKGLC-----YVGKVEEAFXXX 143
           + V+ +L   G    A++ ++ M + G E + +  + L +GLC      V  + +A    
Sbjct: 344 SIVLQALLRAGETSAAWQAYKRMERAGFEADGRALDTLARGLCRQCAANVAALADAREVF 403

Query: 142 XXXXXXXXKPDIYTYTAVMDGFCKVGRSDEGMELLEEALADG 17
                   +P  YTY  +     + G  D  + LL E    G
Sbjct: 404 GKLVASGHEPVSYTYCLMAQALARGGEVDAAVSLLGEMARRG 445