BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029789
         (428 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267905.1| PREDICTED: pentatricopeptide repeat-containi...   214   4e-54
emb|CBI20026.3| unnamed protein product [Vitis vinifera]              210   1e-52
pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1...   209   1e-52
ref|XP_002881217.1| pentatricopeptide repeat-containing protein ...   209   1e-52
ref|NP_850186.1| proteinaceous RNase P 1 [Arabidopsis thaliana] ...   209   1e-52

>ref|XP_002267905.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
           mitochondrial-like [Vitis vinifera]
          Length = 526

 Score =  214 bits (546), Expect = 4e-54
 Identities = 96/142 (67%), Positives = 119/142 (83%)
 Frame = +1

Query: 1   VKSEMDENGVCGCCRETLVCVDIDPLETENFAKELARLACQKEVQTNFNSFEDWIRRNGP 180
           V++EMDE GVC  C E LVC+DIDP ETENFA  L +LACQ+EV+ +F  F++W++R+GP
Sbjct: 281 VRTEMDEAGVCQSCGEKLVCIDIDPRETENFASSLTKLACQREVKADFVQFQEWLQRHGP 340

Query: 181 FDAVIDGANVSLNNSHSFSFFQLNSVVERVKRLSPTKRLPLIILHNSRVVGGPANNPNNK 360
           FDAV+DGANVSL N  SFSFF+LNSVV R++++SP+KRLPL+ILH SRV GGPA NPNNK
Sbjct: 341 FDAVVDGANVSLINQKSFSFFELNSVVNRLRQISPSKRLPLVILHRSRVTGGPAQNPNNK 400

Query: 361 KLLEKWRRSGVLYTTPTGSNDD 426
           KL+E W++SG LY TP GSNDD
Sbjct: 401 KLIESWKKSGALYATPAGSNDD 422


>emb|CBI20026.3| unnamed protein product [Vitis vinifera]
          Length = 393

 Score =  210 bits (534), Expect = 1e-52
 Identities = 94/138 (68%), Positives = 115/138 (83%)
 Frame = +1

Query: 13  MDENGVCGCCRETLVCVDIDPLETENFAKELARLACQKEVQTNFNSFEDWIRRNGPFDAV 192
           MDE GVC  C E LVC+DIDP ETENFA  L +LACQ+EV+ +F  F++W++R+GPFDAV
Sbjct: 98  MDEAGVCQSCGEKLVCIDIDPRETENFASSLTKLACQREVKADFVQFQEWLQRHGPFDAV 157

Query: 193 IDGANVSLNNSHSFSFFQLNSVVERVKRLSPTKRLPLIILHNSRVVGGPANNPNNKKLLE 372
           +DGANVSL N  SFSFF+LNSVV R++++SP+KRLPL+ILH SRV GGPA NPNNKKL+E
Sbjct: 158 VDGANVSLINQKSFSFFELNSVVNRLRQISPSKRLPLVILHRSRVTGGPAQNPNNKKLIE 217

Query: 373 KWRRSGVLYTTPTGSNDD 426
            W++SG LY TP GSNDD
Sbjct: 218 SWKKSGALYATPAGSNDD 235


>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn gi|406855805|pdb|4G26|A Chain A,
           Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1)
           From A. Thaliana With Ca
          Length = 501

 Score =  209 bits (533), Expect = 1e-52
 Identities = 92/141 (65%), Positives = 116/141 (82%)
 Frame = +1

Query: 4   KSEMDENGVCGCCRETLVCVDIDPLETENFAKELARLACQKEVQTNFNSFEDWIRRNGPF 183
           ++EMDENGVC CC+E LVC+DI+P+ETE FA  L RLAC++EV+ NFN F++W+ R+GPF
Sbjct: 264 RTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPF 323

Query: 184 DAVIDGANVSLNNSHSFSFFQLNSVVERVKRLSPTKRLPLIILHNSRVVGGPANNPNNKK 363
           DAVIDGAN+ L N  SFSFFQLN+ V+R +++SP+KRLPL+ILH SRV GGPA  P N+ 
Sbjct: 324 DAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRA 383

Query: 364 LLEKWRRSGVLYTTPTGSNDD 426
           LLEKW+ +G LY TP GSNDD
Sbjct: 384 LLEKWKNAGALYATPPGSNDD 404


>ref|XP_002881217.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297327056|gb|EFH57476.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 572

 Score =  209 bits (533), Expect = 1e-52
 Identities = 92/141 (65%), Positives = 116/141 (82%)
 Frame = +1

Query: 4   KSEMDENGVCGCCRETLVCVDIDPLETENFAKELARLACQKEVQTNFNSFEDWIRRNGPF 183
           ++EMDENGVC CC+E LVC+DI+P+ETE FA  L RLAC++EV+ NFN F++W+ R+GPF
Sbjct: 335 RTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPF 394

Query: 184 DAVIDGANVSLNNSHSFSFFQLNSVVERVKRLSPTKRLPLIILHNSRVVGGPANNPNNKK 363
           DAVIDGAN+ L N  SFSFFQLN+ V+R +++SP+KRLPL+ILH SRV GGPA  P N+ 
Sbjct: 395 DAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRA 454

Query: 364 LLEKWRRSGVLYTTPTGSNDD 426
           LLEKW+ +G LY TP GSNDD
Sbjct: 455 LLEKWKNAGALYATPPGSNDD 475


>ref|NP_850186.1| proteinaceous RNase P 1 [Arabidopsis thaliana]
           gi|75115346|sp|Q66GI4.1|PRRP1_ARATH RecName:
           Full=Proteinaceous RNase P 1,
           chloroplastic/mitochondrial; AltName:
           Full=Pentatricopeptide repeat-containing protein
           At2g32230; Flags: Precursor gi|51536606|gb|AAU05541.1|
           At2g32230 [Arabidopsis thaliana]
           gi|330253558|gb|AEC08652.1| proteinaceous RNase P 1
           [Arabidopsis thaliana]
          Length = 572

 Score =  209 bits (533), Expect = 1e-52
 Identities = 92/141 (65%), Positives = 116/141 (82%)
 Frame = +1

Query: 4   KSEMDENGVCGCCRETLVCVDIDPLETENFAKELARLACQKEVQTNFNSFEDWIRRNGPF 183
           ++EMDENGVC CC+E LVC+DI+P+ETE FA  L RLAC++EV+ NFN F++W+ R+GPF
Sbjct: 335 RTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPF 394

Query: 184 DAVIDGANVSLNNSHSFSFFQLNSVVERVKRLSPTKRLPLIILHNSRVVGGPANNPNNKK 363
           DAVIDGAN+ L N  SFSFFQLN+ V+R +++SP+KRLPL+ILH SRV GGPA  P N+ 
Sbjct: 395 DAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRA 454

Query: 364 LLEKWRRSGVLYTTPTGSNDD 426
           LLEKW+ +G LY TP GSNDD
Sbjct: 455 LLEKWKNAGALYATPPGSNDD 475