BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029753
         (357 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR18788.1| class S F-box protein [Nicotiana alata]                 60   2e-07
ref|XP_003598394.1| F-box protein [Medicago truncatula] gi|35834...    59   3e-07
ref|XP_002268486.1| PREDICTED: F-box/kelch-repeat protein At3g06...    58   7e-07
ref|XP_003623082.1| F-box [Medicago truncatula] gi|355498097|gb|...    58   9e-07
gb|AAX11682.1| non-S F-box protein 1 [Petunia axillaris subsp. a...    57   1e-06

>gb|ABR18788.1| class S F-box protein [Nicotiana alata]
          Length = 395

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
 Frame = +3

Query: 18  LPEDVVFYILLCLPVASLLRFKSVCKSWRSLIESSSFVNQHHFKDDYNNYSLIVMDPSTF 197
           LP+DVV  I+L LPV SLLRFK V  SWR+L++SS+F+N H  +    N  +I+   S  
Sbjct: 9   LPKDVVICIILILPVKSLLRFKCVSNSWRTLMQSSTFINLHLNRSTTINDEIILFKHSFQ 68

Query: 198 GRPSPNPDLYVSLLSGNS----LEASVKLDLP 281
             P+    +   L SG         S  LD+P
Sbjct: 69  EEPNKFRSIMSFLSSGQDNDDFYHVSPDLDVP 100


>ref|XP_003598394.1| F-box protein [Medicago truncatula]
           gi|358348378|ref|XP_003638224.1| F-box protein [Medicago
           truncatula] gi|355487442|gb|AES68645.1| F-box protein
           [Medicago truncatula] gi|355504159|gb|AES85362.1| F-box
           protein [Medicago truncatula]
          Length = 370

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
 Frame = +3

Query: 6   SNVVLPEDVVFYILLCLPVASLLRFKSVCKSWRSLIESSSFVNQHHFKDDYNNYSLIVMD 185
           S+  +P+D+VF IL  L V S+ RF   CKSW SL E+ +F+N+  F+++  + S  + D
Sbjct: 10  SSKYIPDDIVFSILSKLSVKSIKRFSCACKSWSSLFENPNFINK--FRNNLLSKSHPLYD 67

Query: 186 PST-----FGRPSPNPDLYVSLLSGNSLEASVKLDLP 281
            +      F  P  + ++Y  LLSG+  E  VKLDLP
Sbjct: 68  DACLILNHFSGPDYHWNVY--LLSGDRFENKVKLDLP 102


>ref|XP_002268486.1| PREDICTED: F-box/kelch-repeat protein At3g06240-like [Vitis
           vinifera]
          Length = 360

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 33/89 (37%), Positives = 48/89 (53%)
 Frame = +3

Query: 15  VLPEDVVFYILLCLPVASLLRFKSVCKSWRSLIESSSFVNQHHFKDDYNNYSLIVMDPST 194
           +LP++++  ILL LPV SLLRF+ VCK+WR+LI  S F   H+ +      S +++    
Sbjct: 3   ILPDEIIENILLRLPVKSLLRFRCVCKAWRALISDSEFAEMHYQQPQTQARSRVLISCPG 62

Query: 195 FGRPSPNPDLYVSLLSGNSLEASVKLDLP 281
               S +PD      SGN     V +D P
Sbjct: 63  RVIRSMDPD-----ASGNDNSGVVNIDYP 86


>ref|XP_003623082.1| F-box [Medicago truncatula] gi|355498097|gb|AES79300.1| F-box
           [Medicago truncatula]
          Length = 402

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
 Frame = +3

Query: 3   TSNVVLPEDVVFYILLCLPVASLLRFKSVCKSWRSLIESSSFVNQHHFKDDYNNYSLIVM 182
           +S ++LP++++  +L  LPV SL+R K VCKSW+ +I +SSFV  H  +   N    +V 
Sbjct: 17  SSPIILPDEIITELLSFLPVKSLMRMKCVCKSWKIIISNSSFVELHLHRSTRNPQLTMVY 76

Query: 183 DPSTFGRPSPNPDLYVSLLSGNSLEASVK------LDLPDCCNV 296
            P    +   +P     LL   S   ++       L+  DCC+V
Sbjct: 77  LPEDTDKAFVSPISLSHLLESPSKPITLTDDPYYLLNDKDCCSV 120


>gb|AAX11682.1| non-S F-box protein 1 [Petunia axillaris subsp. axillaris]
          Length = 389

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 5/61 (8%)
 Frame = +3

Query: 18  LPEDVVFYILLCLPVASLLRFKSVCKSWRSLIESSSFVNQH-----HFKDDYNNYSLIVM 182
           LPED+VF ILL  PV SL+RFK + KSW  LI+S+ F+N+H     + KD++  +   + 
Sbjct: 9   LPEDLVFLILLTFPVKSLMRFKCISKSWSFLIQSTGFINRHVNRKTNTKDEFILFKRAIK 68

Query: 183 D 185
           D
Sbjct: 69  D 69