BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029740
         (331 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003629211.1| F-box family protein [Medicago truncatula] g...    71   8e-11
ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protei...    71   1e-10
ref|NP_565403.1| F-box-like protein [Arabidopsis thaliana] gi|33...    70   1e-10
sp|Q6DR20.1|FB110_ARATH RecName: Full=F-box protein At2g17036 gi...    70   1e-10
gb|AAO37162.1| hypothetical protein [Arabidopsis thaliana]             70   1e-10

>ref|XP_003629211.1| F-box family protein [Medicago truncatula]
           gi|355523233|gb|AET03687.1| F-box family protein
           [Medicago truncatula]
          Length = 397

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 12/121 (9%)
 Frame = +2

Query: 2   WNFIGDKNCEHDDLINYKGKFYAVDKMGRTLVVDWHTLSVTLGANTIANDHRKKHLVESN 181
           W  + DKN  +DD+I +KG+FY  DK G    +D  TL +   +  +     KKHL+ES 
Sbjct: 218 WTLVDDKNFYYDDIIVFKGQFYVTDKWGTISWIDVSTLRLIQFSPPLCGFGNKKHLMESC 277

Query: 182 GDLFPVDVHYRLPCKDCVG-----------VFLGC-KVFRLDEKERQWVQVGNLRNAVYL 325
           G L+ VD +Y +   D +G             + C KV++LDE+  +WV V NLR+  ++
Sbjct: 278 GSLYVVDRYYEI--SDDMGRNYVRRRYDRDTDVECFKVYKLDEEWGKWVDVKNLRDRAFI 335

Query: 326 V 328
           +
Sbjct: 336 L 336


>ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Vitis
           vinifera]
          Length = 387

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 44/111 (39%), Positives = 64/111 (57%), Gaps = 9/111 (8%)
 Frame = +2

Query: 2   WNFIGDKNCEHDDLINYKGKFYAVDKMGRTLVVDWHTLS---VTLGANTIANDHRKKHLV 172
           W  I D    +DD+I + GKFYAVD  GRT+VVD    S   V L A+++     KK LV
Sbjct: 191 WMIIDDMQSPYDDVIFFDGKFYAVDNTGRTVVVDVADGSSPVVNLAASSVFGGD-KKVLV 249

Query: 173 ESNGDLFPVDVHYRLPCKD------CVGVFLGCKVFRLDEKERQWVQVGNL 307
           ES G+L  VD ++ +   D       +   +  KVFRLD++E++WV++ +L
Sbjct: 250 ESEGELLLVDTYFTMYHDDDEHVRWMIERMIHFKVFRLDQREQKWVEIESL 300


>ref|NP_565403.1| F-box-like protein [Arabidopsis thaliana]
           gi|330251483|gb|AEC06577.1| F-box-like protein
           [Arabidopsis thaliana]
          Length = 428

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 14/123 (11%)
 Frame = +2

Query: 2   WNFIGD---KNCEHDDLINYKGKFYAVDKMGRTLVVDWHTLSVTLGANTIANDHRKKHLV 172
           W  I D     C+  DLI + G+F+A+D  GRT+VVD+ +  +TL AN +     KK L+
Sbjct: 192 WTVINDYIPSRCQ--DLIMFDGRFFAIDYNGRTVVVDYSSFKLTLAANPLIGGGDKKFLI 249

Query: 173 ESNGDLFPVDVHYRLPCK-DCVGVFLG----------CKVFRLDEKERQWVQVGNLRNAV 319
           ES G++F VD+ + L  K +  G F             K F+L E+E++WV+V +L + +
Sbjct: 250 ESCGEMFLVDIEFCLNEKPEFTGGFYSYFNETTVSYKFKFFKLVEREKRWVEVEDLGDKM 309

Query: 320 YLV 328
           + +
Sbjct: 310 FFL 312


>sp|Q6DR20.1|FB110_ARATH RecName: Full=F-box protein At2g17036 gi|50058935|gb|AAT69212.1|
           hypothetical protein At2g17036 [Arabidopsis thaliana]
          Length = 404

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 14/123 (11%)
 Frame = +2

Query: 2   WNFIGD---KNCEHDDLINYKGKFYAVDKMGRTLVVDWHTLSVTLGANTIANDHRKKHLV 172
           W  I D     C+  DLI + G+F+A+D  GRT+VVD+ +  +TL AN +     KK L+
Sbjct: 193 WTVINDYIPSRCQ--DLIMFDGRFFAIDYNGRTVVVDYSSFKLTLAANPLIGGGDKKFLI 250

Query: 173 ESNGDLFPVDVHYRLPCK-DCVGVFLG----------CKVFRLDEKERQWVQVGNLRNAV 319
           ES G++F VD+ + L  K +  G F             K F+L E+E++WV+V +L + +
Sbjct: 251 ESCGEMFLVDIEFCLNEKPEFTGGFYSYFNETTVSYKFKFFKLVEREKRWVEVEDLGDKM 310

Query: 320 YLV 328
           + +
Sbjct: 311 FFL 313


>gb|AAO37162.1| hypothetical protein [Arabidopsis thaliana]
          Length = 404

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 14/123 (11%)
 Frame = +2

Query: 2   WNFIGD---KNCEHDDLINYKGKFYAVDKMGRTLVVDWHTLSVTLGANTIANDHRKKHLV 172
           W  I D     C+  DLI + G+F+A+D  GRT+VVD+ +  +TL AN +     KK L+
Sbjct: 193 WTVINDYIPSRCQ--DLIMFDGRFFAIDYNGRTVVVDYSSFKLTLAANPLIGGGDKKFLI 250

Query: 173 ESNGDLFPVDVHYRLPCK-DCVGVFLG----------CKVFRLDEKERQWVQVGNLRNAV 319
           ES G++F VD+ + L  K +  G F             K F+L E+E++WV+V +L + +
Sbjct: 251 ESCGEMFLVDIEFCLNEKPEFTGGFYSYFNETTVSYKFKFFKLVEREKRWVEVEDLGDKM 310

Query: 320 YLV 328
           + +
Sbjct: 311 FFL 313