BLASTX nr result
ID: Coptis23_contig00029738
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00029738
(434 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tpg|DAA58542.1| TPA: hypothetical protein ZEAMMB73_802520 [Zea m... 126 2e-27
ref|XP_002458168.1| hypothetical protein SORBIDRAFT_03g028130 [S... 126 2e-27
ref|XP_002524665.1| pentatricopeptide repeat-containing protein,... 80 1e-13
ref|NP_190263.1| pentatricopeptide repeat-containing protein [Ar... 80 2e-13
ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arab... 80 2e-13
>tpg|DAA58542.1| TPA: hypothetical protein ZEAMMB73_802520 [Zea mays]
Length = 696
Score = 126 bits (317), Expect = 2e-27
Identities = 68/143 (47%), Positives = 91/143 (63%)
Frame = +1
Query: 4 IDDDRLRASIVAGYAFHRCMSYACRLFEGISLKTSQLWISMISGFIECKQTNEAFRVFRD 183
+D DRL+ S+ AGY C+ YA R+F + + T L MISGF++ Q N+A V R+
Sbjct: 231 VDLDRLQESLAAGYMCSSCVQYAGRVFRDVRISTCFLGNLMISGFLDTGQRNQALGVLRE 290
Query: 184 MVMQSGGEFKAVSKVPLTLLLPECSASSLTGLEIHGHAYRVGFESATSVNNALISMYARK 363
M G E + + LTL+LPE + ++ GLEIH +AYR GFE TSV NAL++MYAR
Sbjct: 291 MAFGCGHEAQHLPSASLTLVLPEVNLATKRGLEIHAYAYRHGFECDTSVCNALMAMYARG 350
Query: 364 NKIELSEQVFKRTPEKDVVSWNT 432
KI S++VF+ KDVVSWNT
Sbjct: 351 GKICRSDKVFQGLDAKDVVSWNT 373
>ref|XP_002458168.1| hypothetical protein SORBIDRAFT_03g028130 [Sorghum bicolor]
gi|241930143|gb|EES03288.1| hypothetical protein
SORBIDRAFT_03g028130 [Sorghum bicolor]
Length = 694
Score = 126 bits (316), Expect = 2e-27
Identities = 67/143 (46%), Positives = 94/143 (65%)
Frame = +1
Query: 4 IDDDRLRASIVAGYAFHRCMSYACRLFEGISLKTSQLWISMISGFIECKQTNEAFRVFRD 183
+D DRL+ S+ AGY + YA R+F + + T L MISGF++ Q N+A VFR+
Sbjct: 227 VDLDRLQESLAAGYMCSSFVQYAGRVFRDVRITTCFLGNLMISGFLDTGQRNQALGVFRE 286
Query: 184 MVMQSGGEFKAVSKVPLTLLLPECSASSLTGLEIHGHAYRVGFESATSVNNALISMYARK 363
M G E + + V LTL+LPE + ++ GLEIH +AYR GFE TSV NAL++MYA++
Sbjct: 287 MAFGCGYEARHLPSVSLTLVLPEVNLATKRGLEIHAYAYRHGFECDTSVCNALMAMYAKR 346
Query: 364 NKIELSEQVFKRTPEKDVVSWNT 432
+KI L+ ++F+ KDVVSWNT
Sbjct: 347 DKICLAYKIFQGLDNKDVVSWNT 369
>ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536026|gb|EEF37684.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 2000
Score = 80.5 bits (197), Expect = 1e-13
Identities = 45/133 (33%), Positives = 73/133 (54%)
Frame = +1
Query: 28 SIVAGYAFHRCMSYACRLFEGISLKTSQLWISMISGFIECKQTNEAFRVFRDMVMQSGGE 207
++V GY+ + M A LF + ++ + W ++I+G ++C+Q +E F VF +M++ GE
Sbjct: 387 AMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILL--GE 444
Query: 208 FKAVSKVPLTLLLPECSASSLTGLEIHGHAYRVGFESATSVNNALISMYARKNKIELSEQ 387
S L +AS G +HG ++G + T V AL MYA+ IE S++
Sbjct: 445 IPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKK 504
Query: 388 VFKRTPEKDVVSW 426
VF R P+K+ VSW
Sbjct: 505 VFNRMPKKNEVSW 517
Score = 58.5 bits (140), Expect = 5e-07
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Frame = +1
Query: 70 ACRLFEGISLKTSQLWISMISGFIECKQTNEAFRVFRDMVMQSGGEFKAVSKVPLTLLLP 249
A R+F+ + + W +MI+ + + E+ R+F M+ + FK ++L
Sbjct: 269 ARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEG---FKPNISCFSSILSA 325
Query: 250 ECSASSL-TGLEIHGHAYRVGFESATSVNNALISMYARKNKIELSEQVFKRTPEKDVVSW 426
S +L G+ IHGH ++GFE V+++LI MY + + + +F EK++VSW
Sbjct: 326 LASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSW 385
Query: 427 N 429
N
Sbjct: 386 N 386
Score = 55.5 bits (132), Expect = 5e-06
Identities = 37/135 (27%), Positives = 71/135 (52%), Gaps = 2/135 (1%)
Frame = +1
Query: 28 SIVAGYAFHRCMSYACRLFEGISLKTSQLWISMISGFIECKQTNEAFRVFRDMVMQSGGE 207
++++G+ + + + FE + W + ISG+++ + EA ++F ++ E
Sbjct: 123 ALISGFMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLES---E 179
Query: 208 FKAVSKVPLTLLLPECS--ASSLTGLEIHGHAYRVGFESATSVNNALISMYARKNKIELS 381
K +KV T ++ C+ G+ + G + G+E +V+N+LI++ R +I L+
Sbjct: 180 VKP-NKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLA 238
Query: 382 EQVFKRTPEKDVVSW 426
+VF R EKDVVSW
Sbjct: 239 REVFDRMEEKDVVSW 253
>ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis
thaliana] gi|110741961|dbj|BAE98921.1| hypothetical
protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 80.1 bits (196), Expect = 2e-13
Identities = 47/142 (33%), Positives = 82/142 (57%), Gaps = 4/142 (2%)
Frame = +1
Query: 19 LRASIVAGYAFHRCMSYACRLFEGISLKTSQLWISMISGFIECKQTNEAFRVFRDMVMQS 198
+ ++V YA C+ YA +F G+ ++ W +MI+ + + + EA R FR+M+ ++
Sbjct: 219 IMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRET 278
Query: 199 GGEFKAVSKVPLTLLLPECSASSLTGLE----IHGHAYRVGFESATSVNNALISMYARKN 366
+ + + V + +L C+ SL LE IHG+ R G +S V +AL++MY R
Sbjct: 279 --KDSSPNSVTMVSVLQACA--SLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCG 334
Query: 367 KIELSEQVFKRTPEKDVVSWNT 432
K+E+ ++VF R ++DVVSWN+
Sbjct: 335 KLEVGQRVFDRMHDRDVVSWNS 356
>ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata] gi|297323351|gb|EFH53772.1| hypothetical protein
ARALYDRAFT_905886 [Arabidopsis lyrata subsp. lyrata]
Length = 657
Score = 79.7 bits (195), Expect = 2e-13
Identities = 46/142 (32%), Positives = 82/142 (57%), Gaps = 4/142 (2%)
Frame = +1
Query: 19 LRASIVAGYAFHRCMSYACRLFEGISLKTSQLWISMISGFIECKQTNEAFRVFRDMVMQS 198
+ ++V YA C+ YA +F G+ ++ W +MI+ + + + EA R FR+M+ ++
Sbjct: 219 IMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTET 278
Query: 199 GGEFKAVSKVPLTLLLPECSASSLTGLE----IHGHAYRVGFESATSVNNALISMYARKN 366
+ + + V + +L C+ SL LE IHG+ R G +S V +AL++MY R
Sbjct: 279 --KDSSPNSVTMVSVLQACA--SLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCG 334
Query: 367 KIELSEQVFKRTPEKDVVSWNT 432
K+++ ++VF R ++DVVSWN+
Sbjct: 335 KLDVGQRVFDRMHDRDVVSWNS 356